Scaffold Ga0222714_10032259

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10032259
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3874
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F007310	Metagenome	353	Y
F009750	Metagenome	313	Y
F013084	Metagenome	274	Y
F013087	Metagenome	274	Y
F018927	Metagenome	232	Y
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1003225910	F007310	N/A	MRTVLWNNTERWFNHHHYELLIEDITGLDLKKSLCPEMVKYMAKRLKDTPYNRTFRSKYSIYQDEYKTLVEKFNYQAENNGKIEVA
Ga0222714_100322592	F013087	N/A	MEPTVWIYFSKTGTGYELKGSDVISGFDAFINSDGTYIIEYAYSDIKNSMHFFIYEWDKSQKKRRTIFEGYQREFILVNFAKNLNVCHNVRQSIFKEYLLTDEELKNANSQAKNRTIK
Ga0222714_100322593	F001561	GAGG	MQTRKQKIEQLNKAIDVLWHGVKDTKDGDYPRIVFLYKEMLKLDPKNSDAWENMIWLMWSLSVNKKDTVWLLEAEKFTKRYLSIMPNGYRAYEYVGMFYRSMVKDERLAIRYYESAIRWKDAPESTHHSLISLCNKTGDKVRAIGYCKMTLARFPNDPWTKSKLQELTKN
Ga0222714_100322594	F009750	N/A	MKAIVSAIYSGEFEENKILKPHLTDRIGIRMKFPEGARCIIWTNGKKYYAVCEAFGTIFTLDIPQNLGDDIWKRFKTEFEGNYSYSYI
Ga0222714_100322596	F043399	GGA	MLFDYPIVIWTIVKKNGNYILLDSCGVEVFRRKENRKKEIYQYCEDNGIDVQEEF
Ga0222714_100322597	F018927	GAG	MNKHLEITRHLSVDGTTTYYVVEKSKNSSIIVWTGNNKQAAYQVAYRNARKSNTPLYDTLYRAEIDKNGVKHIIPNGNELLEVN
Ga0222714_100322599	F013084	N/A	MGIFSVLELMQDTKEAVLARGHNVKNWLVLGNDCYALECADCKMTCMVKEKPLPNEIKASGEALAMNCVKPVKEKKLRKK