NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10027251

Scaffold Ga0222714_10027251


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10027251 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4320
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F008358Metagenome / Metatranscriptome334Y
F034149Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100272511F034149AGGAGGMTISQGLVMEENEEPGFEIIHLSFRKKLSENMYGGPVNYYIGNIVFRLTDPDAINRMKYYMEDNEDLSVAPDLELLEKYYEGLHFVFENPEHAILTDDIPEEERYAPLDIRNKNGIKYEDVFIRAYRRNMAPLHDFIEYNEKFDCYRMHEYFQDTPVVRGIIQYLQDMKDGKPNPSRTVYHEQFINTLENLCWWWD
Ga0222714_100272514F000345GAGMTEKKPNELGKALQEWWDSDTFKQIQKEQKESKERAIGKYFMLSEEDKLDMIQAICYIMCKAESEGTSHRGLMDALGVYPSGFWIDNLMDVHNALWSYYHDKKQEQELKDDLDALDNFISKKDETELS
Ga0222714_100272519F008358N/AMTSTYIYFVIFFCIAYLIVTDQSVARAFYMLTQLARVQYEKTKWWILHNPANPIVKYFMWRRAIKLAKEIQKDFLKK

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