Scaffold Ga0222714_10010974

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10010974
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7782
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (40.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F002243	Metagenome / Metatranscriptome	578	Y
F004898	Metagenome / Metatranscriptome	419	Y
F027765	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1001097413	F027765	N/A	MNDEDIKQFMNAYEDFMKHAEVAQFNHEAWVSAQQYTDHFYEQKAAELEVTVDYYIQEFV
Ga0222714_1001097415	F002243	GGAG	MPDFPTLQSKDGTMLVGFYPVQTPYGDISQEWCMQILSWKGIDQISKKYLNRVEKAVAIRERLAYDYVVTGDNQDLPQTGNPFYGAC
Ga0222714_1001097416	F000744	GGA	MTETTVNLNVHEIGVILSALQLLGVREENQIAREYGSVPALYNKLYSVFEQMDRSGTVLRNDVVPSF
Ga0222714_1001097421	F004898	GAGG	MDLSEMLDELREIAIYETDPQDWMGYMENDDYWVPDVELAY