Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10009314 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10009314 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8632
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8632

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (28.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F018171	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000931410	F005024	AGGAG	VRPAVYMEVDTSRFDAALKQYLLTTRRDLHKAINARFFYLMVRLFVLVPPRSPGQERRRISDYLGKPLGDINRKSKKTGKRIGRSRLLRRVHLIVQAKEAKAGRRGLYGEEMKTMASALMRKSIASVGYLRSAVVKAIRVYNKGFTQFQAQKWKPLVKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTRARGFQAVPGYNPTATIVMAAGIADNQYNRVASIYNPAMQRALDDETAELANHMTEALLANGKVLEDNGFDIK
Ga0222714_1000931411	F009398	N/A	VTIIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAVTDGNTPVPGGFQDNVTSRILVKFSDWKTFDSTLVSMDTTLYTLDQGTEFSRLLKEDGFYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR
Ga0222714_100093148	F018171	N/A	MANSQGRVYRFGSPATLALYNSAGNLVVTLYTSPDMESYDLTHEADTEEVRNSSGEVVGHITYNNRLTLTVNFIPAGANAADALKAMASPDANGTCVITGAPAVQCGPYEDAINAPGSPGTGPGGRWIYAGGASLKFTQTGKVTGTITLKRYAGMGTTVTGAAIGL
Ga0222714_100093149	F006107	N/A	MNAVALRAEKAVADYLAAADWSSSGTGTPTCLTSYSRGLYDDPDLQDTMPNFPRIIVSTNSARPVQRTDLTCEVEVEVELQLSADDTDEADALSTVRVLDNRILPLFDDSGASALDAAANDDNGPFTAQFAAPLDFGASSISNRARTFTRTFSLYCSATT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10009314

Overview

Ecosystem & Geography

Associated Families

Sequences