NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10008677

Scaffold Ga0222714_10008677


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10008677 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9023
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014380Metagenome / Metatranscriptome263Y
F072331Metagenome / Metatranscriptome121N
F093878Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000867710F072331N/ALKPRKSKDLIPIVAEELNLSQQMVLDVTSFYWQEIRKSLSSLKHSRIHVTNLGDFTIKHWKLDDKIDKLENFKENFRQRGLQEIVTRFRTDETLFDLKAIKVLMDEEKQRKDFIKLHKTKSDESKREHNQDLESKGSDPGGSD
Ga0222714_1000867711F014380N/AMALVNQVDKRVRMTTWQIVKYQILTHCYLFDIPVSEADLNCLTFLAIEGDQELTHFCNKAYDKKIFSSTQSVRNCLTKAEKKGLIKKEGKNKKKIFINPDLKLHANGNILLDYKFLSVEA
Ga0222714_1000867713F093878N/AMSEENVLQEEQDLKNVPSKEEIIAFIKEQIEVKTVQLELQNLNTGLATSRAEELKALAFIAQMTQQGGAKPEGTPHTITQEDMDNNPELAEEGIKVGDEVIIPSMPPVEKQRSLKK
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