NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10008471

Scaffold Ga0222714_10008471


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10008471 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9167
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000645Metagenome / Metatranscriptome962Y
F004115Metagenome / Metatranscriptome452Y
F013317Metagenome / Metatranscriptome272Y
F014613Metagenome / Metatranscriptome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100084712F000545N/AMKQDAHPFICSNCKLVTPHIELHKYDSTDIAEAPEEVWLVECQRCFMQRIIYPSDRVTAKEDDIVRCDQCGKWKMKAAKCRICRLAAGLELISERYWTGNETKERPYNAAL
Ga0222714_100084713F000645GAGMSNYLDDYVSVQDRLKEYINDFPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKQSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVAQITKEFGAEIIDEIPLCSGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGHWVFQK
Ga0222714_100084714F004115GGALSLTRNHNQNQYCDYCKYRWGANKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP
Ga0222714_100084716F014613GAGMFPNLSDEAVVGIIIGVPFIGLYIWSLFTSAKAKAFNEGYKRGRSSVRYTEIVK
Ga0222714_100084718F013317N/AMIEKKKWDYLADIRARTGAKTLYINSTPHGVYQFDLGAITEPEWALKRLPITTDFGNKATNERLAGFLDIRLADLLLV
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