NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10006472

Scaffold Ga0222714_10006472


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10006472 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10926
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005633Metagenome / Metatranscriptome394Y
F006262Metagenome / Metatranscriptome377Y
F010611Metagenome / Metatranscriptome301N
F019637Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000647212F006262N/AMVRAVFTYTVAIKRAYLRSVYSALGGATLLAALTAKVIAAASTIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLIGDYDLAVELLNQDGISSPTDAQIFAKLMAEVLVAVTSYGGDFSNFRREGTIRTGMT
Ga0222714_1000647215F010611N/AMTQRAYAEHSGLTTGYVTMLVKKGMPMDSPEVADAWRAQNIRAKNIRRVTDPEPEEGPAPEQEGPYRPAEASNPIDTATAATDSPEGAYERQRQIERAAYDLAVQALRQRRADAGRLVAIHAAAAKNLTSARDEVTNQAERERRLVSGDWVRRVMQEHDGAVASLLKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHQTDPWK
Ga0222714_1000647216F019637N/AGERETPMISSDQVQISFPMPPTHLQFLIDQFGLANTAWFIRLMKRGTSPEQLAGYCVPDPRDSRRDGVFRALQYAASVPDSALPENIRTALRP
Ga0222714_100064729F005633AGGMRIATTISVDRNGKTKIVAGPEVDASLQRSDFNTANVPEGGKLILWIQGALAPKIRKG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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