Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10006363 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10006363 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11054
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (55.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11054

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (55.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F021513	Metagenome / Metatranscriptome	218	Y
F027171	Metagenome / Metatranscriptome	195	N
F052478	Metagenome / Metatranscriptome	142	N
F085642	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000636315	F052478	N/A	MAGAMLVLAGVFIGLYGLLVLLGDREPDGTIREGIAGATKRRQSRE
Ga0222714_1000636318	F085642	GAG	MLTSSKERKQAAADARELLRQQIRNEKRDLRDLRFIAQNQTIPPDKAAEFWQQLLQLQQEHGKEGHTEFWWSLVPRWEQIQLSRGGGLCPDNLKPQGAPRLTQTQLDLEAALKRAATNSRTIEASQVLQAWAMEDGTL
Ga0222714_100063633	F021513	N/A	MSMYVLSETQFDQISQALEAARFALDASQHVQLDLTKPKQTIPLPAGEKLVRTSDVRKSQSQAKTRKSSGKRGVSVLNDAKVMEIKRQLAAGNKSVAKIAREYGVHITTINCIKWQKTWKHVQLPEETTSTKG
Ga0222714_100063637	F027171	AGG	MILELDDFSMDTDGLVTVTAVVDEMVLVYEQTLLDPAEYGPALCRGTFYLSDEDLIPATDAELARLFYNRIDDWEVLHPDD
Ga0222714_100063639	F001841	AGGA	MSQSVSGSANLLKLNSIGLKPPNFFLGLLRVAGWLFWRDPVAKPEPPQPKRPRKPTLGYTVGDIPYELLAVVRIAWYRKGLAYEVEEYQIEESDDAQKQFQYIVGTALRQGADVCVLTQYEPAALGVPE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10006363

Overview

Ecosystem & Geography

Associated Families

Sequences