Scaffold Ga0222714_10005359

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10005359
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12247
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004546	Metagenome / Metatranscriptome	433	Y
F004898	Metagenome / Metatranscriptome	419	Y
F007569	Metagenome / Metatranscriptome	348	Y
F048809	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000535912	F048809	AGG	MMIKQFVDWFVAPSQKPIVEEIDIYSKLIELQERIIALEAENVETSNCLYELMNSIDAVDARIDILTIEKWSNDNV
Ga0222714_1000535925	F004898	GAGG	MDLSELIDELREIALYDSDPKDWMGYLESDDYWVPDSELAY
Ga0222714_100053596	F007569	GGAGG	MNFTPEQYRLIYTAVRRYQVEKCILDSQQYHECGEVLDELFDLVYTQRREQPT
Ga0222714_100053597	F004546	GGAG	MEHTEEFPFDGFPWKLVYKEGNETRKCFFESEAHRQKHIDRYKLKKKDIKLSYKFEE