NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10005359

Scaffold Ga0222714_10005359


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10005359 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12247
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004546Metagenome / Metatranscriptome433Y
F004898Metagenome / Metatranscriptome419Y
F007569Metagenome / Metatranscriptome348Y
F048809Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000535912F048809AGGMMIKQFVDWFVAPSQKPIVEEIDIYSKLIELQERIIALEAENVETSNCLYELMNSIDAVDARIDILTIEKWSNDNV
Ga0222714_1000535925F004898GAGGMDLSELIDELREIALYDSDPKDWMGYLESDDYWVPDSELAY
Ga0222714_100053596F007569GGAGGMNFTPEQYRLIYTAVRRYQVEKCILDSQQYHECGEVLDELFDLVYTQRREQPT
Ga0222714_100053597F004546GGAGMEHTEEFPFDGFPWKLVYKEGNETRKCFFESEAHRQKHIDRYKLKKKDIKLSYKFEE

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