Scaffold Ga0222714_10005276

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10005276
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12367
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F026861	Metagenome / Metatranscriptome	196	Y
F034902	Metagenome / Metatranscriptome	173	Y
F058095	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100052761	F026861	N/A	KGGRLMKLDEFKALIESQRKAQQLTNLEKIAKIVNNTNNKKGKN
Ga0222714_1000527614	F000684	AGG	MTLGGYTYRVGDLFTTSKTGITGRIEKFVPQTRNVTKVMLRLANNQTRFAMVKTY
Ga0222714_1000527615	F034902	AGGA	MISTALAIQEATRDAVHDEEVMSMAAHIFHSRNEVDEQEFAQMLYMYSAHLSAMTATLVTHACLTESQINDMLETIKEMDSMGKDIENGNN
Ga0222714_100052769	F058095	GAGG	MEYNYVLTTAYDGELFSTLRLSDFAEASEAWAKCSDHGNAKEYATYNLTDPTGKMFTKNFYSDGRVSVK