NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10005116

Scaffold Ga0222714_10005116


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10005116 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12566
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039606Metagenome / Metatranscriptome163Y
F040004Metagenome / Metatranscriptome162N
F052563Metagenome / Metatranscriptome142N
F073489Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000511614F073489AGGAGMTAISVGFELTDAEQCMPHLKGVMQAIALDDIEELFRSYVREAGCEIMSQLLRDAGWDIGGKSFIEMGGW
Ga0222714_1000511619F039606AGGAGMDKDRAIITQVAAKIASDLVNKEANTDAKLGEFTTLFTSVKDIIFEVIDGGKDAEIYEMAKSTFNATPVSNGTSTESVGGVLQVIGKQHGDLPDWLIKACKRDGVTKVYDNRDGLSVNPKRPWFKAVDADKAYWAPKTR
Ga0222714_1000511624F040004GGAMKESRWDIPKPNFKKDLEFGKQGEDQVKQFLVGIVNGSFEVKSDRYRNGKMVVEIAQNPRKHGWKPSGIMITEAEWWVYVYTMNQAMIVVSTERLKRYIKMLPKSRIRLFAEGTNNPAKGYLLLPEEVSQLLYDSAYDDVKE
Ga0222714_1000511626F052563GGAGMGQLMSVKEFWKTVYKRIVYTFITKRKNMSNEESYGWIYDIIPAKQVEEIESKAKNLQQNLDNGVNVVLSATNDSAIRLCRAYYEGTQGNLDAWMHIMGFLSALIDTIEEHLNEEGIDPYAK
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