Scaffold Ga0222714_10004233

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10004233
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14187
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (53.85%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F006220	Metagenome	378	Y
F011390	Metagenome	291	Y
F039139	Metagenome	164	N
F039635	Metagenome / Metatranscriptome	163	N
F040618	Metagenome	161	N
F043397	Metagenome	156	N
F053301	Metagenome / Metatranscriptome	141	N
F054860	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000423313	F001561	N/A	MQTPEQKLKLLNKTIETLWHGVSDTKEGDYPKIINLYKEVLKLNHKDRDAWENMIWLMWSMAINKKDTAWLFEAEKFAKMYLSINPNGYRAYEYLGQFYRIMMVDERLAIRYYESALRWKDVPETTFHSLTSLYIKNGDKIRAIGNCRFNLSRYPNDPYAKSKLKELTK
Ga0222714_1000423319	F039139	GGTGG	MFLNSFEFTTEDITTILRAHDTDISINELVEISDALDFDSIARTALMFDSSEDQLQAALSHAEDLMIMDGLFITEPKRFQMP
Ga0222714_100042333	F040618	N/A	MENTTTVRMSMTVNVKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDIFILTEENYFEGVTSYGNEIWHLNPDNGKMCGKTYLYSTMTDRLYVPYGISQPKEKSPTFLFEIS
Ga0222714_1000423331	F054860	N/A	MNISLKNTIINYQNSEETLAFNALLCIDSKPFAEVSNDGRGGENRYRPLGDSMDWIYNHALVTQFREWCSIQPPVYDKESGNTYKFDADIFVNDCLTEHAGNTEPITVSI
Ga0222714_1000423334	F053301	GGA	MTVKEVIIMLEEIAEKEGYNTECIVEIEEQDYNTEAEIHTVCTNGYQDGTKKICLLGTKDDETNEE
Ga0222714_1000423337	F043397	AGGAG	MPRYDVYIPFTCSYEGEIAEEEFSTIVKADNDKDAIQEAIKELQSEYVVKTIDSKEITVEEIPVFPSFDEWEEKYTALKNPFAQEGEQGLGEIMFDTDGDEYQTVRGFDSGKIWTVRSTEYGLMLTAGLGMVDRFGYILSEESITEEDWSKAFIID
Ga0222714_1000423339	F039635	N/A	MTEAQANKIKIKVEVFNELYAPITLRFQMFSTSENNWAVTITYNYTENEWMTFASLDSSYNQINDKLSGFQFGLEAVEAYQEEHGNLKFSQSDAPLG
Ga0222714_100042334	F011390	N/A	MEIKTTNYGVCKVKKHKYQDNGNLALSLVDETGQPVVNITTNVFPMGENEFCANYYNMGATLWQDIVASGLFKQTGETVPSGYCDYPVCVLLVDID
Ga0222714_100042337	F006220	AGGA	MKKFKKFNEELAIASGTEMMRASQMRPTSFKDKSKYNRKLKHKNRQENNSGDSFLQSL