NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10003929

Scaffold Ga0222714_10003929


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10003929 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14842
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (23.81%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015859Metagenome / Metatranscriptome251N
F018917Metagenome / Metatranscriptome232N
F020698Metagenome / Metatranscriptome222N
F025730Metagenome / Metatranscriptome200N
F043373Metagenome / Metatranscriptome156N
F049007Metagenome / Metatranscriptome147N
F073488Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000392911F043373N/AMSFDHITDNYSRTLLLDVYQAMFKSNLWDALKSHDDKMGFQYTDEAKILLDHMKLLDLHSGYSMAWVMSHMKKIAKFGYIEYVKDFMRIRT
Ga0222714_1000392914F073488N/AMDFEEFHVRDVQKLLREIILPRLCDLEQEMQLLRKTTWPICQAMREHYSFKIDENANISRQLKALVDPEEYQRIVHIKEEFRHRYCDKIRNSL
Ga0222714_1000392915F025730N/AMLAAVLFYVVSNPATYKLVESLLGRFFKIATNGSPTAIGLLVHTAVFAALFYLLAPMVSGLDAKLSVTKNRNENFDDVLMTPLKVTTAEEETEAVKKEE
Ga0222714_1000392917F020698AGGMWMFGIIAIVAAVLIWRRTQEGLRPEFTPRCKELLAVPVSRIFPDALIPDRKNDALDKFSELKDKLDGQALAGNKLATECRLIVDNLMTLLQKDDMVGFSDALKKLLL
Ga0222714_100039292F015859N/AMLLVQCAQPYRIIHDGKKTRLIIPGCNKPLPKEVGFGHKLRGLQINAWRNEENESDLEYMMLTYSGKPLSTSLCSRIQLLVEDEFEFEPCPLEEDNETDVYFSHYKDDETRIWVKIKDYPNLLSDLSMIFVSLKINILAASITTINGIAHDTFRVEKDGKRISDDLEDEIRTLVKLLEVRDYT
Ga0222714_1000392920F049007N/AMPACFPNMQPLVIDHNPFVYVKPNTTDNEFAASHVTPDTKFMCNTYTNRPTQMLARAPGGTAVRSSDPVTKVYMYSIQRP
Ga0222714_100039293F018917N/AMSYALGGIMLGPFYKGRSSIQAKSIVNDAIRYTWVVGKIPNINHVIQTIPEGVRYTIDDHRPKTVPYDGVHITLNYLIEVQIHTPESLAVRQNEIHHRIYRMKKYNDHIAMKYDEVMENRQWKILEECYKLPSPMSLSLPIDGNVNTMWEDLLDSIALKYNLELQEV
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