Basic Information | |
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Taxon OID | 3300021961 Open in IMG/M |
Scaffold ID | Ga0222714_10003411 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16209 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (62.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001881 | Metagenome / Metatranscriptome | 622 | Y |
F004255 | Metagenome / Metatranscriptome | 446 | Y |
F008358 | Metagenome / Metatranscriptome | 334 | Y |
F010681 | Metagenome / Metatranscriptome | 300 | Y |
F024290 | Metagenome / Metatranscriptome | 206 | Y |
F048809 | Metagenome / Metatranscriptome | 147 | Y |
F090331 | Metagenome / Metatranscriptome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222714_1000341114 | F001881 | GGAG | VTERAQEFMNTIWEARNAGADTEEKLVSTILSVVAENIKSYNAQDGRIVLDKNDLLQLAEELKQ |
Ga0222714_1000341118 | F024290 | N/A | MTLEEILEEYGQEVLDTYYELFPDKDITKFGDRFCGPVGEYSDFVLDCYYSTGSDELESIEDFENGVFQEYYYYDHKTSTGFVFYNER |
Ga0222714_1000341123 | F004255 | N/A | MNEKSKIYYNVWCCAYQRRGLYKGTDREHREHETVRMCLDMKDVKFHQFDTEKPHYL |
Ga0222714_1000341132 | F010681 | GGA | MKVRLNHNQQFWANIFRCAVERSNFYFQEKDLDRHAREHTTVVLALQKGEEFWKELL |
Ga0222714_1000341133 | F048809 | GGA | MIRKFIEWFFASTEKFTVEDDVYSKLIELQERIEALEAESVENSNCFYELGNCIDAVDARIDILTLESWNKKDV |
Ga0222714_1000341145 | F090331 | GAG | MTLGLAIAIYTALVAFVSSIMLYYLKVMYPREEAQLKEKSK |
Ga0222714_100034117 | F008358 | N/A | MSSYTFWLIIFAFVLYFIATDQSVARAFYMLTQLARVQYEKTKWWILHNPANPIVKYLMWRRSNKLAKELMEELESRNK |
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