NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10003411

Scaffold Ga0222714_10003411


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10003411 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16209
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (62.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001881Metagenome / Metatranscriptome622Y
F004255Metagenome / Metatranscriptome446Y
F008358Metagenome / Metatranscriptome334Y
F010681Metagenome / Metatranscriptome300Y
F024290Metagenome / Metatranscriptome206Y
F048809Metagenome / Metatranscriptome147Y
F090331Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000341114F001881GGAGVTERAQEFMNTIWEARNAGADTEEKLVSTILSVVAENIKSYNAQDGRIVLDKNDLLQLAEELKQ
Ga0222714_1000341118F024290N/AMTLEEILEEYGQEVLDTYYELFPDKDITKFGDRFCGPVGEYSDFVLDCYYSTGSDELESIEDFENGVFQEYYYYDHKTSTGFVFYNER
Ga0222714_1000341123F004255N/AMNEKSKIYYNVWCCAYQRRGLYKGTDREHREHETVRMCLDMKDVKFHQFDTEKPHYL
Ga0222714_1000341132F010681GGAMKVRLNHNQQFWANIFRCAVERSNFYFQEKDLDRHAREHTTVVLALQKGEEFWKELL
Ga0222714_1000341133F048809GGAMIRKFIEWFFASTEKFTVEDDVYSKLIELQERIEALEAESVENSNCFYELGNCIDAVDARIDILTLESWNKKDV
Ga0222714_1000341145F090331GAGMTLGLAIAIYTALVAFVSSIMLYYLKVMYPREEAQLKEKSK
Ga0222714_100034117F008358N/AMSSYTFWLIIFAFVLYFIATDQSVARAFYMLTQLARVQYEKTKWWILHNPANPIVKYLMWRRSNKLAKELMEELESRNK
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