Scaffold Ga0222714_10002782

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10002782
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18257
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (54.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018711	Metagenome / Metatranscriptome	233	Y
F036214	Metagenome	170	Y
F038601	Metagenome / Metatranscriptome	165	Y
F097251	Metagenome / Metatranscriptome	104	N
F104787	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100027821	F036214	N/A	SVNVLPAFAMDNEAWDWMIPKPDTSSAFNVEKEARRLENTPNAGPIAAQLYRAWNMQQTLLQQATNRIAALELQLMKGNQADA
Ga0222714_1000278212	F104787	AGGA	MEPHLMRLAFDLTEVRLLLRRGIAAGHWRLEDLDKPSPGWVITMEDAKRIPGFTPPVFRNPLRDEPTPSERVQVTDPRDFALAPAATDPVQRGGTPLPMAAHGSVAESFSNSGVQGHEGCVGDEADYGDETHLGAAWEGGAFGAGDLSDDW
Ga0222714_1000278213	F038601	N/A	MKLYAPENKGKYVWQTADAKTKQVSYSVTTTRTAPPDAAYGHPMGKYDDQGLYMTFCPNVGADDPRSPLAARYVVHPMAASERDKADKERLWSHI
Ga0222714_100027822	F097251	N/A	MQPMIILTDSQVVELNNRIGQIQRLLESAQVIRAGGAAQPKAITETDETPSIVGKRRKAKRKRGALNAEKVAEIKARLAAGNESTQKIANDYGVHVTTVNLIKYGKTWKNVQASA
Ga0222714_1000278224	F018711	GAGG	MNKPKVTAVGRLLKSKQGEPRIHKVIAVNADGTVETVLEKPMQ