NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10002440

Scaffold Ga0222714_10002440


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10002440 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19643
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (26.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001732Metagenome / Metatranscriptome644Y
F016799Metagenome / Metatranscriptome244Y
F062744Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000244029F016799N/AMKMMPLVRQYHPDITNTDLDVYKIKDKVMATPISNHPDPFQVTDRLGINKINDTKIKVVVYNSKGLFYII
Ga0222714_100024404F062744N/AMLNIMLYICNMEEQQLQPTSVKKTYKITATFELDVPDEHYMLVTHERQGLSRDLVGYPLSCQRLTVYSSEHPKIGRFRRKPENIRCTFERCDENLDYVI
Ga0222714_100024409F001732N/AMKRLLLILCAFVLSGCFSTIKPAKQIDDNQKVIAKEEKKVDNTLAEMEKNDKSKKVQTSVLAQGIQHSLSQVTNPPVQVETAKSLNERVVSIVGSPHIDEIKRIKATVDLLNSALEEERKKGDELLSQRDEIINKLQKEKSDLNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFFVSAMTAIIIFVIVFVLLRILATVHPAAGAAFSIFNMLGSAVISVIKALTPKAFEMSNFASKDKVDEFKSPLVKIVDVIQELKEKQKESPKKVFELAEILKRFDKEMDSTEKDLIDELLKELKWRK
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