Scaffold Ga0222714_10002236

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10002236
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20732
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (7.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F002303	Metagenome / Metatranscriptome	573	Y
F020010	Metagenome	226	Y
F024315	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000223618	F020010	N/A	MATSNFHNVNASHIFAVELQDEYDYQDLVDNLESEFNTNIDYSDYSKSDPNELRSFPSKSLGSFNNSIEIGEDEVEIYVTPVIRSGYYEGCNLDWHVRYYVNGYEDDTYESHPRVQTLVEVYTNFIENVYEQYSQPLGVTARFSNGETIYHPINLN
Ga0222714_1000223625	F002092	N/A	MRTTNQKALDYLNSNPIVNNFINTLNIQRKDYYVKANMPNQWKELTVEVGNKYIRLWDGTMCWGFISRVDGDLKGSPIKKGDLLKPATWKAPAKHARGNIIDGTAKYGVYGPSYIS
Ga0222714_1000223626	F024315	N/A	MNYSELSKLSVEELRNINQMVVELIKAKRTVESLQNKVGLKVGMTVRVNHPKLAGKELSVNKINRTKATLSVKSGACYVVPISLIEY
Ga0222714_1000223629	F002303	N/A	MDIREQCRERATKFAIEYGFPNVSEHILDIMVSIMCTRDKSSYPGGGFVDAVIANNLYLAMSRADTDCRNNIFLLTMCRMNCFLNEF