Scaffold Ga0222714_10001553

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10001553
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25753
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (44.64%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F005388	Metagenome / Metatranscriptome	402	N
F038648	Metagenome / Metatranscriptome	165	N
F045703	Metagenome	152	N
F085601	Metagenome	111	Y
F097203	Metagenome	104	Y
F102590	Metagenome	101	N
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000155321	F045703	N/A	METGQEGGKAVSISPDLSVAFVYKHKMTSEVLVVDIDRARELDAARPYWQHVSTVDPITLLQLIVRAKGRERNTIIKELSEIP
Ga0222714_1000155329	F003748	N/A	MFKVNRKDAGSNYINAEGEYTVTVMKVEENLDVKGREVCKVTFATDEGASITDRFINQENTWFRVNQLVAATNHNVPDGTEVDFLGTKGSFANFLKAMIGLQLGIVTRFEEYEFNGEKKKTLRLKAMKPLAPAAPEEKPF
Ga0222714_1000155335	F001964	GGAGG	MISPKRNLFAPPAFKVQISGAIGWSDLKQRVVSFQTIEYASRKEAEQAAKELNPGEYTQGRIRVVPVEMSEDYDIYPIPERTKNNP
Ga0222714_1000155337	F002227	N/A	MKLTIQSKQNAQTIIDLFNAVINGEIQEHQATPLSIYDEEKHICSIVAANGEQILELIIEREAGDRIAPAFEGNPNDEKLP
Ga0222714_1000155339	F102590	GAG	MKTTPFTPGPWRQTGPNVRAGDALICWATNHHANAETPEPEKLANARIIAAAPQMLLALERLTHPMADDEDLDYAREIIAKAKGN
Ga0222714_1000155340	F103133	N/A	MRYKIQLETPNGWSDLRESIDGGPYETCFFPTRELADAAREEFSELSEFLESTRIVPASVPETENIYA
Ga0222714_1000155343	F085601	N/A	MNYYVMQTSLASGSKPQLVHWAKTHDDAISYARQQLDLWRETGVANPPRYTVHYSGQTTLQPLWDSLD
Ga0222714_1000155347	F097203	N/A	MNYPQSIPAAYQSADLERAYRLGWNHGHGIACHNVPKIGERMNRCIDWVGLEIVTPENIAEYHELLCFAAESNSREYSPFEFIAHEFNESEDSESLWEAFEAGTSDSIRNDLKSYSYAEL
Ga0222714_1000155349	F000922	N/A	MKLTDDQWKTARGLYLAGSDWGTIADKLGAKKATLQKRAEREGLTKLRREAKSISLSEISVKTEKSLEALSAIVRSKLAADAASTLERIEGYDLEGLKDEATRETILASVAKRSALTFGWSETGEQASVSINLLGSMPDRSPVEVVVSEAETK
Ga0222714_1000155351	F005388	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGSNGGACDVTYNDVPVGYDAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAVADSSFTQVETIPAGVNELPWIQTGSVGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPGFRDDLRYADMGSGTGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSAGTGKGTVFSVNPSWTTAPYEGAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLNTDCADPLDKKGQHYAEFIHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0222714_1000155352	F038648	N/A	MPSFTLPEGVEIPENLKEGEAFQTMATIVLGKNGKAEFIEIDGVAIPGYEKKSKGKKLAERGYEEEGEGEEMESEGGGAREGFIAEVMRRGSGPMA