NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10001430

Scaffold Ga0222714_10001430


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10001430 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26871
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (60.27%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F004134Metagenome / Metatranscriptome451Y
F004208Metagenome / Metatranscriptome448Y
F017818Metagenome / Metatranscriptome238Y
F039496Metagenome163Y
F043358Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000143019F039496N/AMTDISKLSFKELQQLEKQIEERKQVLSESNDCVEGYKVTFCVKFNPAKHEFDELNSPEEFGDYLANDVANYIIKDGFPDLIVSGFEVEEMNDEYKVEWKDFWENEE
Ga0222714_1000143023F017818AGGAMTEEQKEQLNKDAYYDWIAENDTYPEHSHKWIVGLYTPDGGRFDMLHRYFGPFETQNEAQAFATNYKKTYTKPGFISRTKIFPLCEVL
Ga0222714_1000143024F043358GAGMKVYDYRIVETFSLETLKPYFLIEYYHLTEKKYHPFSNVSFQTLEKAQEGIRLIRKYNEPVYHYVE
Ga0222714_1000143029F000919N/AMRFRNIEFRWSTCNKKYELIRWYKAEVDGCEEREYCYVVAFFDKGKEGYDMRTVGDRFFEDKDAWVVGKYALEFLNAIFEIEKVEEELK
Ga0222714_1000143038F004134N/AMTKHPTKDWEFDDTIEDAFQEWFNDLCGGFSFRSEWFFEDAEVEDVNTRKDLMYKWLHSAFVMGYNMGRMEGLEVGLTE
Ga0222714_1000143051F004208N/AMTYSLNQEATAFSYTREELFECITKIVAHPHKTITEHDQSRALAIMVVFDDYFTNYTESDNNGGHCVYERDELDFEDFVRYKLNLEYYHPVDADEVLK
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