Basic Information | |
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Taxon OID | 3300021961 Open in IMG/M |
Scaffold ID | Ga0222714_10001421 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26956 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (46.94%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
Associated Families | 9 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001165 | Metagenome / Metatranscriptome | 760 | Y |
F001807 | Metagenome / Metatranscriptome | 631 | Y |
F003889 | Metagenome | 463 | Y |
F015201 | Metagenome / Metatranscriptome | 256 | Y |
F019817 | Metagenome | 227 | Y |
F020342 | Metagenome / Metatranscriptome | 224 | Y |
F027818 | Metagenome | 193 | Y |
F055679 | Metagenome / Metatranscriptome | 138 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222714_1000142123 | F055679 | GGAG | VIDLTTGWVQHPGVTGGFHLVYIDNLVGEISIVTGPKGSGLMGHNDPGVETTYEVWFPGMCNPTGYLTLAEVQGIIKFMRQREEERLAWQEEED |
Ga0222714_1000142127 | F027818 | N/A | MEKAVHEGREFLAITMVVNDMYEGVCRIKFNNANGLMTAYNNGTLVVGQQLILTQYDVRLSSIRTHYMSDGDLVALKYPEMALTRVRAIIGSAPRPKVQPAVTAPKAEATLEEIPF |
Ga0222714_1000142133 | F019817 | N/A | MSIATLPGLTINQRNLYTYFLGHKKKHGNTPCFVPRCTTQVSRLDQYLQALVKLEQYGLIRVDRTSENYTGWIMTEPKSK |
Ga0222714_1000142135 | F001165 | N/A | MTNNTPRIPDSLDMQRLQAMQLVAKMKESAEKHGIGFIGGFIAPNGEKFVMSNMNEEDSQALLPEDLK |
Ga0222714_1000142136 | F001120 | GGA | MTKRSLISFDRTIHGVNITEHGIKSVTKAIKLGPFQLTLNANLNGVKGSVSVPGTGVSIPNIKLI |
Ga0222714_1000142137 | F020342 | N/A | MSAYIDQLTLFDRINLAACAQRRASANVLDSTRFEGEFSTAFLWTKYRLTKTPHYSYIED |
Ga0222714_1000142138 | F001807 | N/A | MNVLAIEHTSFTDTHVTVTAVVDEMRLLYRATALDPEEWAPALCTATVELDPEEPIPLDEDGFCAYLDHIDPQWQLVDTSDYE |
Ga0222714_1000142147 | F015201 | GGAGG | MNKALIVYLVDKRKKLARKDVESKHATTELKKQSAATF |
Ga0222714_100014215 | F003889 | N/A | VGPEYLAIGLTAIISAITGGSWAANRLLDRQRERIQQSFDYTGSQKRRIDILEDQINRMPMEYVLKVDFLREIQEMHNNFREINNKLDKLMEKILSK |
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