NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10001421

Scaffold Ga0222714_10001421


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10001421 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26956
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (46.94%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F003889Metagenome463Y
F015201Metagenome / Metatranscriptome256Y
F019817Metagenome227Y
F020342Metagenome / Metatranscriptome224Y
F027818Metagenome193Y
F055679Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000142123F055679GGAGVIDLTTGWVQHPGVTGGFHLVYIDNLVGEISIVTGPKGSGLMGHNDPGVETTYEVWFPGMCNPTGYLTLAEVQGIIKFMRQREEERLAWQEEED
Ga0222714_1000142127F027818N/AMEKAVHEGREFLAITMVVNDMYEGVCRIKFNNANGLMTAYNNGTLVVGQQLILTQYDVRLSSIRTHYMSDGDLVALKYPEMALTRVRAIIGSAPRPKVQPAVTAPKAEATLEEIPF
Ga0222714_1000142133F019817N/AMSIATLPGLTINQRNLYTYFLGHKKKHGNTPCFVPRCTTQVSRLDQYLQALVKLEQYGLIRVDRTSENYTGWIMTEPKSK
Ga0222714_1000142135F001165N/AMTNNTPRIPDSLDMQRLQAMQLVAKMKESAEKHGIGFIGGFIAPNGEKFVMSNMNEEDSQALLPEDLK
Ga0222714_1000142136F001120GGAMTKRSLISFDRTIHGVNITEHGIKSVTKAIKLGPFQLTLNANLNGVKGSVSVPGTGVSIPNIKLI
Ga0222714_1000142137F020342N/AMSAYIDQLTLFDRINLAACAQRRASANVLDSTRFEGEFSTAFLWTKYRLTKTPHYSYIED
Ga0222714_1000142138F001807N/AMNVLAIEHTSFTDTHVTVTAVVDEMRLLYRATALDPEEWAPALCTATVELDPEEPIPLDEDGFCAYLDHIDPQWQLVDTSDYE
Ga0222714_1000142147F015201GGAGGMNKALIVYLVDKRKKLARKDVESKHATTELKKQSAATF
Ga0222714_100014215F003889N/AVGPEYLAIGLTAIISAITGGSWAANRLLDRQRERIQQSFDYTGSQKRRIDILEDQINRMPMEYVLKVDFLREIQEMHNNFREINNKLDKLMEKILSK

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