NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10001161

Scaffold Ga0222714_10001161


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10001161 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29832
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (16.28%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003127Metagenome / Metatranscriptome506Y
F004474Metagenome / Metatranscriptome436Y
F014972Metagenome / Metatranscriptome258Y
F089575Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100011611F003127N/ASSSTITANEVTALTVTGEVFLYKLKSNLSSYTAPVRVNKENGTLWYEQTLNMILASDSKELRSEIHLLAQNEVCAIVEKADGTYVALGFGEGLQVNDGSEYTSGVLKSDRLGHSITLAGLENDEVPDVDATVYATLLTQQSPAI
Ga0222714_1000116133F089575N/AMADSLDFLDSLGVSTADLGQPETAYEKFILSLANQVTKEFKEYTEKNVSNTGALAQSIVYFPTGALSFEIQADDYFKYQDQGVSSIDGNKYDTPYSFTLPYVTKNHAKAIQQWKGYDLSHAYASAYVTKHKYGIKPRNIIENVMTDDVLNRISNDLAEVTGLMFEVSFTKNTEKWQ
Ga0222714_100011615F004474N/AMNYLISVENLKKLGLIHNNTDTKLLAVAIKRSQDMHVQPALGTPLYKALLLRVQNNDWTDTNYVTLMNEYVLPCLVAFVDYRASVLLNEKLTNKAVGRTQDEYQNANTDDETTALRDLLRKDAYFYKERLIGHLQDDQGTKYPEYIEGCEDLTCNENVEKDRTGYKPTGWII
Ga0222714_100011617F014972N/AMKYIFPQFKVEIVDPVISIDLNTIHDKAVDKLLAVDVLLTTDSAKFGVRAEDMPYADSWEDSDIPSMVDTWIKQYEQA
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