Scaffold Ga0222714_10001152

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10001152
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29947
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056981	Metagenome	137	Y
F099145	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000115230	F099145	AGG	MDVKDTIANTTTMGGIFAYLMNFQGELTVLLLVTGLLLNITRLVDWFRGKKKD
Ga0222714_100011527	F056981	AGGA	MKTYKEIVEKFESAATYHTAINSFGHGSLDKLNDNMNQLYPLLYVRPLNSLGVQPYGQRTLSFEVYMLDLPKLDRTTDIQVMSDTERMLYDVYTFFRDGAQQQIYEINMTGITPVQEAFQDRVFGWVATYNIVTDSAGLTICHIPTNQ