Scaffold Ga0222714_10000702

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10000702
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38205
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (54.76%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018915	Metagenome / Metatranscriptome	232	Y
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F036666	Metagenome / Metatranscriptome	169	N
F042808	Metagenome / Metatranscriptome	157	N
F085631	Metagenome / Metatranscriptome	111	Y
F090287	Metagenome / Metatranscriptome	108	Y
F097235	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000070215	F034904	N/A	MRKTLAQAKNSTIAQAVGLATCDERFVQLLNEAQARLADMGKWWGTYKKLRICVTAGCITWPREVKTIEAMNLCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQEQLLDRGMVTQYRDSIETCYFQVAPELAADAGKRVLLQGIDPITNEAIRTYDTVSGEYVWGEYVTLPNPNITPFVQTTKQFKKPGLTGAQKPLTQGRLRISTYNGTVTTEVALWGPSEENPEYRRTYLIGMPEVCGGTSGCNAEAQNDCIDHGDGCVPPDEECTNTVVEAIVRLEFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERSVINVQPFGSAKTQFIFGGF
Ga0222714_1000070218	F042808	N/A	MVAEKNRLVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWLKGLTFPDPTVVTDSGYYNAAVQDAFKTGYFQGCGAYVNDDGTPYLFASISGKMFRIDIENNFLVSDQTPQGGTFTVDTRGRVANIATYTCSVPHGLFPGMVVRLPERVGASFPEGFFGDFVIQNTPTPTTFTTYSPGVDAGPLLGPSFTGYWLQANNPNADHVFFQQAENWLIVQDQLNAPYLFDGTTFRRATGEEVPVGGPMAYGKGRLWVASGSEYYGGDLVYGDPAYGRNSVIRFTENTFLNEGGAFAVSNGPITGLAFGANLDTSLGDGDLLVFTPTATYAFAAPVDRDVWKDLSYPIQRFALLNFGSFNHESIVPMNGDLIFRAQDGIRSLIYARRDFTEWGNTPISRQVVRALAYDTEFYLKAASSVNFDNRMLMTIQPQKVNGRGVVHRGLVVMDFDLVSGMGRKLPPAWEGVWTGADILQMLTVRVQNSDRCFLFGLDQGKIGLYEITRTGQFDFDGFDDSPIEWIVETRSLTFAEPANKKRLMSAEQWYDQVMGNIEAKVYFKANEGECWHPWAEIKDCAKYRNCEPGEVSCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRIAMVAQRLQEDIYGDLSRVACPLLSA
Ga0222714_1000070222	F036666	AGG	MYNQGFQAVARAVAKLRQTAQGARILAEWLGDGGTPVDRRQAQDRIDTCNRCIHNKPTDARSVTKTVAEAILEQEQARNDMAMFLQGEGLAGTCEVCGCYLKLKAWVPLSYLGKTEMPDNCWISHERKAI
Ga0222714_1000070228	F018915	GAG	VNWIYQLVKAFLDWLRETPAPTVEDGNAPKPLKNDLAARIADLPGLPDEGGPGPFR
Ga0222714_1000070234	F090287	AGGAGG	MPALTPQELATLGGCFDCMEPGLQQTMIITLLQQIQAASPGAPLTTTSLGGLRTVTATSAANPARKKFTLQNQKNEELYVKFGTGASTLDYHIALAPHNPGSKHSDPLMLDGYIGAISVAAATGSPSYTFAEFV
Ga0222714_1000070235	F097235	AGGA	MYGQMMRKRKMDGMGRMESEVETVEFTPPKELKLEGDSGTAMVDWRVTPRGTVEIIGFDGITLGETGKQDMEEDTAEGESMDMEEEA
Ga0222714_1000070236	F028149	AGGAG	MASGNVISCKQFASFLVSQEPVYDKEVLKDVRPFDGLIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENSTGDSCVGQPCDPSENKIGWGYTRSTYSLEKQAWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYTPTGISGGAFACKAGLPAISFSWVGAGYTTLRVLDSASAPVTAASLGLLTPDILRSRVTRQYFLGAIQAGKEGYDSLQLHTDKETFRYLAKSNSQLTDSWRFGEFAPAAKEFYKFGFMGFVGDFMVKVLQFPLRFNATATPGNYTLVLPYKNVAASEGIRSEFNGDYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGRPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVNGACPVIIAGCAADPGDPAQDYNSTNAVCNPTIQFTATPVTGGTNFVLNANESILCNDNYITSAAINAANVAALVVALQTVWDAEFGSAAGTWSVVSGNVIQLASSAFGTTTEVVPCTNVTLEFSI
Ga0222714_1000070237	F085631	N/A	MSNTIRVSYRLPIEVAQMLEDEAIRSRRTKTAVLIIAIEDHVLRGEDDLPEVIKKPVDTRKAR