Scaffold Ga0222714_10000579

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10000579
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42000
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (94.37%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F012670	Metagenome / Metatranscriptome	278	Y
F056409	Metagenome / Metatranscriptome	137	Y
F062715	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000057911	F001059	AGGA	MATYDIEALKADLPTAKDLAQFVYDKTQIALDLIGKSKEDQYQVAKNALEGKKVPAEFLTDENPYVDRKELIPVDEIRKLPPRSDDLPPVDSQIHFFGATNMPHPLDPQSDRKVGINFKKYFDGTITYQVMGPLEQQAVGSRINKYGQNVPEKYTWLDPRTEELVMRYPNGTFSKTGQGLYTYLVGEKGAGIWPLIDRDIVSATSKNIADPWA
Ga0222714_1000057914	F004695	AGGA	MLDKQNIIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPQGKVNFEFERISENDEMGSRQAMKMALHFINSKNDSYSIIRDWAQDALLHKTGVVMVSPVRNPITQYKEVEGTRDQLRSFEIMAAEKGLVAKRQQMRRIDVNLEGVAQETMMDETGSPVEPTGEEVADAIKANTIYRAKYKLTGYSTNIQIKHVAQHYFVCNPTIPGIRNQDFCGFYDPMTIHEAKSQFPYIDIEKFAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRFSRVVMITTAWLKRDIDNDGEEETIEVCYSGSYILYIKEVDFIPLAVMVPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFVDAEEIQRGVSALFILDRKFDPAKHVYEFAPMQGNLAYVQDAMERFDQDTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAVGLKDLIYIVWKTMIQYSDDYNIQQLAEAMLPGSGGFLDAKSMENFEFIDRNMINVDLALGFLSDENRLTRQQLISQAQQQFAGILMQLDPSVPEMFEKARRPFEDTLYALGVKNCDSYLPTFEEAAKMLQAKQAAGPGVAEQEVQSKVELNKAKTQESATVAALNMKKAEDIDMDNYFEYQAMKAGKLSAVQVD
Ga0222714_1000057918	F000857	GGAG	MELNLNNEEAKVNEDYFLKGNLEAGIEGVVRKNDKLYNEVKSGTWSQTFKTNNIDYKIGALDGARYVQYTQHNTDHIKQYCKERREFYQMIGTTDNPIFAGTFEAMSLPKAIAHSISSKYFNNRPWELIKMDKKDKILFYAIVNEYYSEYVCHPSGKIPLPYNPAIPTK
Ga0222714_100005793	F056409	GAGG	VKPLTQRQKQLIASNVIAACRDIEKLNKTGYNYLYQCSGFIAHYSLQGFIAYYSNHSLQADIEANARFNQWKNFTPNDQHYAYYMEKRDCYNMILGRLVAREALNEQFDHAMQFLRDHLTVIHIK
Ga0222714_1000057938	F062715	GGA	MLMLGSALKGIRSCCEMLNQGKAEIQRIKKGVEDAKAIVKDVSGFFGWITSLFSGAQNADKAPQETLKSPQTPQKKEEYVEYIPDEDAIIDQFIKHVGDFFKAQAYLVAYKEDLERKVFGSSYGDNNIGALELISIETKLVKCGAELRELMNEAPPQLGPLYSRYKAMYSKILDEQKKARERDRKNEKQRRVLKVKTENDRIDRCVPHWVTLGLIIFFWVFLWLIQSLSTMQKSTFGAWFSSPQYVLSHSQLLPLSILTTRFLANK
Ga0222714_100005797	F001915	GAGG	MEWSLAHPLHDVDDIVNLADGFFGHEADGILTRSRDVFRHRVTVATTEQLFNKSREFIAVCWQHDRNGVPEKLFGFCWFDRGGYTTYSNEEISNAKFHHVDLSLSPRIRVKLINEMIDQHILWAHTWGIPVVCSTSIRSEHDGFMKIHRKRGFTVNGSYAWIRTEEAAKCLINQ
Ga0222714_100005798	F012670	GAGG	MFDQPIRPEGSDVSSEDKKAQARAYAAQKRAAKKAEKHAMGLVTGRTAPEGFVNKGGRPKSVVNRVTEYGALFNKLNEAHVEKGLPPLKTAMEVLIEAMQSDELDLKEKAKIAEKLATFESSRAPVISIEHVQNLVKEEDVSADDALDEFLDSLRKV