NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10000503

Scaffold Ga0222714_10000503


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000503 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44542
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (78.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020680Metagenome / Metatranscriptome222Y
F023832Metagenome / Metatranscriptome208Y
F032635Metagenome / Metatranscriptome179Y
F091428Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000050339F032635GGAGLINRQWRLADKNNHYYHQSHNGLIVGHAYNVVHTIVWGAKIPINAAEELILGQYVELEYAKRAIEEYWETKDRTLEVVHEHLLSQS
Ga0222714_1000050342F023832AGCAGMIEVYEMLKDGKPFKFETLVSRLGCKPVSAMVLICALKRDFNADIETIRDGRKVDCYQLHNAADIASKMVGKAKATKTKASKVAKVAVLKTKAVVSKPKAAVVDDGSVATLDVQEIDNDAELESLKAELGLSESYSE
Ga0222714_1000050344F020680GAGGMTTANPLTLASASDIKTLVSTGVATHADAIVRVDAVLTRKSLTDGKKARWTRLREWLVREQAQLDCVNS
Ga0222714_1000050346F091428AGAAGGMGISLKQRREMVKIERDVIRNLRDDQMRIRAAIKQSRLNIKMHQEVLVDERKFARIVKEDQRALRAKKRAENRAARIAKMEVRLAALKARA

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