NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10000492

Scaffold Ga0222714_10000492


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000492 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45189
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (20.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018174Metagenome / Metatranscriptome236N
F030379Metagenome / Metatranscriptome185N
F060896Metagenome / Metatranscriptome132Y
F060905Metagenome / Metatranscriptome132N
F103224Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100004922F060896N/AMTLEQLHSLTEDEVAMLWGIVNMGNPPVLPGQQMDPELFPFIKNHKLRERVIQFDKYVKPEYIGIYDSLKSKLGY
Ga0222714_100004923F060905N/AMKKIIITLLTGFSLFANDLFLYDANEKTELSEVINNKLNILPTVNGQTFTLINGLSITTKTNDYANYMFPQRLAISQLENTSVFFSQTQTTYENDFKLPNVVKVKESSFNFTFDGEIYCVNDTTNVYNIGTAMGFINFGKSKFFAKSGTKYTHVYVVEGTITVLDNKSSKKKELKQGDYLVITPQVNFSPRANTVAVSGNSFSIKEVDDTEKDIHTKELEKLKNKLDNVLFVSYSTNIFGIKLK
Ga0222714_1000049242F030379N/AMTVNFIKDNRFPKFINKLASNSLNQTDSAYVDDSPNGIFDGDIGTILVKDGKSILYKTNTDDTFTNLSDYYKSVVDSKSELLTSGINKKATWIKNSSSTEKTWKFLGYTCPFDSTCAPCPVPYVYYPIIS
Ga0222714_1000049244F103224N/AMTCKKPDPSQKVYHYIEVDSTTIALYDSLMDQPISYGTKIKIQVDINRLLPKDITIYYYSLKEFIKLKPIKPYIGKK
Ga0222714_1000049245F018174N/AMSNKKTDRKNKTNLTVTWPSNDTYFGVSDLANLNKDFIAITLRVRLKNALDEGVVTQIGSVHGGKGRPKLAFAMTPVTDAAINSARTAGVVLNDKYETVNVLDVKAETDTAGHTEVESTSTTTKVVA
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