Scaffold Ga0222714_10000460

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10000460
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47011
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002226	Metagenome / Metatranscriptome	580	Y
F004169	Metagenome / Metatranscriptome	450	Y
F008358	Metagenome / Metatranscriptome	334	Y
F066719	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000046028	F004169	N/A	MSEDDLKAVLAKYQQKAFELYNSNIVLETQVEKLNATVSALSAELEKLRKPKRGVKVEEDFQ
Ga0222714_100004603	F002226	GAG	MSLISQTDREMVIEALEYYVQKLKEDNCTPASISAFQTLLNWVELEHFKHEN
Ga0222714_1000046040	F066719	AGGAG	MVVFLTATIITCSDALSVIQRISRVVGLTEVQRTEIVKEIRKVVPSCPIKVVKK
Ga0222714_1000046042	F008358	GAG	MSSYTFWLIIFAFVSYFIATDQSVARAFYMLTQLARVEYEKVIWWVRHSPDNLIVRWLIHRRSMKMAKELMKEFEEKNK