NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10000307

Scaffold Ga0222714_10000307


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000307 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58636
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (18.03%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016527Metagenome / Metatranscriptome246N
F016969Metagenome / Metatranscriptome243Y
F022187Metagenome / Metatranscriptome215N
F027825Metagenome / Metatranscriptome193N
F035738Metagenome / Metatranscriptome171N
F065483Metagenome / Metatranscriptome127N
F068838Metagenome / Metatranscriptome124N
F077303Metagenome / Metatranscriptome117N
F078286Metagenome / Metatranscriptome116N
F101167Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000030716F016969N/AMTKQEAEKKVYELTEKLIFVKKDFKDVAAGYKEKMKEIESEIKAIVEETSAIPLASSKDDDGDDE
Ga0222714_1000030718F101167N/AMPKAFRHKLYTLPSNFNEMNKFIETNKIQMMEHIVSSIEYAIDKKLSFVEIFSFKNSDFVVTLPENQFKENLENVYSYYIEKEKYELCVRVKSVENKLNSILDKITHEKKEKSTKRKK
Ga0222714_1000030729F068838N/AMPYFNIKSSPVSFGQLNNLGLSVSSGNSSPSVNEFYELEPAIVLDVILDEKHPEIVNKRHFVDSRNIPQNYKGEQPLNTDIDYTYIGACKVRLCFSQQGIEKEKLSWAFPIESTGIVEYPLLNEVVIVVKYLDKLFYTRKLNLNGFVNQESNFRLEKFYGNNDGNTDLVGEDSIKSEPVEGPTSLNAHKKIANNQVKGVLGSYFLANSKIRKLRRYEGDTVFESRHGQSIRFSAYDSIRENDKGFYPDYKGDPTVNKPTEGCGNPMILIRNRQRKLSLDKPIAGISKLPDIPSIINSQKNVGGLIEEDINHDGSSIYITSGLTKSKWKTTCYKSLFQQGKEEQPLFSPIGSTSFNFDIENLKGDQIVINTDRLILSSRFGESLHFSKERYGVVTDSEYTVDAHDQIVLTTNNKTVLNSPAIYLGQYGQTNEPVLLGQTTVDWLYDLCNWLLDHVHWYNHVHNNSPGPNPDKTQESVQDKQLKFLRDNLDKLMSRRVFVTGGGYAPGVDGVMPNGMKNGTEPVSVNIVSGEGLPGEFKGKLRREGPVEIQFEEV
Ga0222714_100003073F016527AGGAMKKVLVLVSLLTALTVTAGDNSSLSVEAGYNNQYIVNGVARSEGSPFVGVGAVKSLKYADVYLGGTLLANGDLDQSHWTLGAGKEVDVWKDVFSARADATVTRHQAGSFGIPNSTEFGVKLALPNKLATPYVRGAFDIDLDQKGAFVGIERAQKLPLGFVITPAVEYGKVYGASSDYTAVNAKATLTRPFEFSFGVLTPFASVGWYDNDFSAAKYNWATREFSGDVVYSGGLRLSF
Ga0222714_1000030731F035738N/AMKSNELKEIIRAVIKEELDKTLPILIPKVLTEVLSGKQVPIIDSQTPTKNVVKESVQKPKEIKKYSSNPVLNEILNQTVVKIPREDSMAGLDSSFKSQAFSGMQINESAEVTEPEPVAPVTEEQGKVMDVLKRDFRSLMKAVDKKKQNGTIGSGMVSMG
Ga0222714_1000030735F077303N/AMSIQSQINDFFTTGQFNNNIDEFGNVNLYISSSNVNEQYIAFPLINFNYKKDEIENLYDVNISEIQTETPIEKQILNQTFLNEYNKVLSENQDLKEKLNDLVDEIQSDSSKSQLSAARDLIVELRIKLKQGNKPEDFSDKFPFNLKSENE
Ga0222714_1000030739F065483GGAMIKSLNRDDVQVTPFVAKKLWNPTNIEATDLILWMSGSLSGSISHIYIDYGDGTSVPTTSSTCDLALQQQEDNFVQYHRGLNITGTFFPVGNQYYNSFSNPVNIDGTYMRLVYNTNKQLFYNTYDNPVQLWGVENFNLQSTYRILTDVMDVFTIPKNYFGEKISPNSVTIIDNQDDSTYLIKDDGNQNLILSGSYFSTYQEIEFTDL
Ga0222714_100003075F078286AGGAMSKPEQYGAKPNDETINSAYAINKCIMENNICELSEGTYYIGGNNIDSNDPEKVLKSGILWGWKPEQNESGVKIIGKGKGKTILKLSKHLSGRRDLAVNGNQLIMVQAVGPGGDGSVDCKNIIFKGITFDGNYNEINEAKGNELTTAGCTTFGSNTLYEDCEFKGFNVGKDNATSFIIISLLSKNSKDGVKGTTVRRCDFHSPGRNNRYPEHDTEQIVHVQVGGHLAGKVFATGCIVEQCTFRGDAGKTQFSPLAGISVANTKGAIIRKNNFDGFEGMCYYVDTGTNIDTVVEENSALSVPCFIRLSAQNYVRQYGSEWWAINYAYHHNLLVRNNNVITTGKGTWNWKPGKYAPWDGIFLGYSMDRDLPNLSSVFKNIVIQENNLNVSPANMLKNLGGWWPQSNCYGNPTPVGPVPPEPVIGEIKLINNINKYIPEKEDRQKTITERIKNIFKCK
Ga0222714_1000030755F022187N/AMEESKEIIKSDESFKQKIKELIKQVVDEITTSAAAGSGEGSAGVPRVPTWVSKNKKGRPDVATALGYTLAKPVNEAADPNAQPQQSGEQGQGDPNLYDVKPELTDFETRVSQSTLQNKSEFQNKILSKIGNKQVQLRASKGYGQPEKDYIVNVSGVSIDFYYEKYVIIVKGREQGKQKESEYFVKAPYQIKILGNAVVTPSARKKQQQAPATPVAPAVPTNTATKGV
Ga0222714_1000030760F027825N/AMPYKIKGKCIYNKDTGRKLGCTDGDVQRYLRALYANVPDAKKNEIRTKLTEIFRRSFAKPIVETAELNKKNVKFRDELNKNQGLDFKPYEVAKIAEITGPVNNKNVGFGMELSFDKEFNENTIKFVIKKLTNEEDDTKNSFKYGVWYTEYQNEEDFDKPSAEIRYKLSDPIPNDTGEGEIKNKLYSFIKNAIKINN

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