Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10000307 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10000307 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58636
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (18.03%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

58636

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (18.03%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (30.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F016527	Metagenome / Metatranscriptome	246	N
F016969	Metagenome / Metatranscriptome	243	Y
F022187	Metagenome / Metatranscriptome	215	N
F027825	Metagenome / Metatranscriptome	193	N
F035738	Metagenome / Metatranscriptome	171	N
F065483	Metagenome / Metatranscriptome	127	N
F068838	Metagenome / Metatranscriptome	124	N
F077303	Metagenome / Metatranscriptome	117	N
F078286	Metagenome / Metatranscriptome	116	N
F101167	Metagenome / Metatranscriptome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000030716	F016969	N/A	MTKQEAEKKVYELTEKLIFVKKDFKDVAAGYKEKMKEIESEIKAIVEETSAIPLASSKDDDGDDE
Ga0222714_1000030718	F101167	N/A	MPKAFRHKLYTLPSNFNEMNKFIETNKIQMMEHIVSSIEYAIDKKLSFVEIFSFKNSDFVVTLPENQFKENLENVYSYYIEKEKYELCVRVKSVENKLNSILDKITHEKKEKSTKRKK
Ga0222714_1000030729	F068838	N/A	MPYFNIKSSPVSFGQLNNLGLSVSSGNSSPSVNEFYELEPAIVLDVILDEKHPEIVNKRHFVDSRNIPQNYKGEQPLNTDIDYTYIGACKVRLCFSQQGIEKEKLSWAFPIESTGIVEYPLLNEVVIVVKYLDKLFYTRKLNLNGFVNQESNFRLEKFYGNNDGNTDLVGEDSIKSEPVEGPTSLNAHKKIANNQVKGVLGSYFLANSKIRKLRRYEGDTVFESRHGQSIRFSAYDSIRENDKGFYPDYKGDPTVNKPTEGCGNPMILIRNRQRKLSLDKPIAGISKLPDIPSIINSQKNVGGLIEEDINHDGSSIYITSGLTKSKWKTTCYKSLFQQGKEEQPLFSPIGSTSFNFDIENLKGDQIVINTDRLILSSRFGESLHFSKERYGVVTDSEYTVDAHDQIVLTTNNKTVLNSPAIYLGQYGQTNEPVLLGQTTVDWLYDLCNWLLDHVHWYNHVHNNSPGPNPDKTQESVQDKQLKFLRDNLDKLMSRRVFVTGGGYAPGVDGVMPNGMKNGTEPVSVNIVSGEGLPGEFKGKLRREGPVEIQFEEV
Ga0222714_100003073	F016527	AGGA	MKKVLVLVSLLTALTVTAGDNSSLSVEAGYNNQYIVNGVARSEGSPFVGVGAVKSLKYADVYLGGTLLANGDLDQSHWTLGAGKEVDVWKDVFSARADATVTRHQAGSFGIPNSTEFGVKLALPNKLATPYVRGAFDIDLDQKGAFVGIERAQKLPLGFVITPAVEYGKVYGASSDYTAVNAKATLTRPFEFSFGVLTPFASVGWYDNDFSAAKYNWATREFSGDVVYSGGLRLSF
Ga0222714_1000030731	F035738	N/A	MKSNELKEIIRAVIKEELDKTLPILIPKVLTEVLSGKQVPIIDSQTPTKNVVKESVQKPKEIKKYSSNPVLNEILNQTVVKIPREDSMAGLDSSFKSQAFSGMQINESAEVTEPEPVAPVTEEQGKVMDVLKRDFRSLMKAVDKKKQNGTIGSGMVSMG
Ga0222714_1000030735	F077303	N/A	MSIQSQINDFFTTGQFNNNIDEFGNVNLYISSSNVNEQYIAFPLINFNYKKDEIENLYDVNISEIQTETPIEKQILNQTFLNEYNKVLSENQDLKEKLNDLVDEIQSDSSKSQLSAARDLIVELRIKLKQGNKPEDFSDKFPFNLKSENE
Ga0222714_1000030739	F065483	GGA	MIKSLNRDDVQVTPFVAKKLWNPTNIEATDLILWMSGSLSGSISHIYIDYGDGTSVPTTSSTCDLALQQQEDNFVQYHRGLNITGTFFPVGNQYYNSFSNPVNIDGTYMRLVYNTNKQLFYNTYDNPVQLWGVENFNLQSTYRILTDVMDVFTIPKNYFGEKISPNSVTIIDNQDDSTYLIKDDGNQNLILSGSYFSTYQEIEFTDL
Ga0222714_100003075	F078286	AGGA	MSKPEQYGAKPNDETINSAYAINKCIMENNICELSEGTYYIGGNNIDSNDPEKVLKSGILWGWKPEQNESGVKIIGKGKGKTILKLSKHLSGRRDLAVNGNQLIMVQAVGPGGDGSVDCKNIIFKGITFDGNYNEINEAKGNELTTAGCTTFGSNTLYEDCEFKGFNVGKDNATSFIIISLLSKNSKDGVKGTTVRRCDFHSPGRNNRYPEHDTEQIVHVQVGGHLAGKVFATGCIVEQCTFRGDAGKTQFSPLAGISVANTKGAIIRKNNFDGFEGMCYYVDTGTNIDTVVEENSALSVPCFIRLSAQNYVRQYGSEWWAINYAYHHNLLVRNNNVITTGKGTWNWKPGKYAPWDGIFLGYSMDRDLPNLSSVFKNIVIQENNLNVSPANMLKNLGGWWPQSNCYGNPTPVGPVPPEPVIGEIKLINNINKYIPEKEDRQKTITERIKNIFKCK
Ga0222714_1000030755	F022187	N/A	MEESKEIIKSDESFKQKIKELIKQVVDEITTSAAAGSGEGSAGVPRVPTWVSKNKKGRPDVATALGYTLAKPVNEAADPNAQPQQSGEQGQGDPNLYDVKPELTDFETRVSQSTLQNKSEFQNKILSKIGNKQVQLRASKGYGQPEKDYIVNVSGVSIDFYYEKYVIIVKGREQGKQKESEYFVKAPYQIKILGNAVVTPSARKKQQQAPATPVAPAVPTNTATKGV
Ga0222714_1000030760	F027825	N/A	MPYKIKGKCIYNKDTGRKLGCTDGDVQRYLRALYANVPDAKKNEIRTKLTEIFRRSFAKPIVETAELNKKNVKFRDELNKNQGLDFKPYEVAKIAEITGPVNNKNVGFGMELSFDKEFNENTIKFVIKKLTNEEDDTKNSFKYGVWYTEYQNEEDFDKPSAEIRYKLSDPIPNDTGEGEIKNKLYSFIKNAIKINN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10000307

Overview

Ecosystem & Geography

Associated Families

Sequences