Basic Information | |
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Taxon OID | 3300021961 Open in IMG/M |
Scaffold ID | Ga0222714_10000258 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 63185 |
Total Scaffold Genes | 124 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 68 (54.84%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → Viruses | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000345 | Metagenome / Metatranscriptome | 1253 | Y |
F001971 | Metagenome / Metatranscriptome | 609 | Y |
F003331 | Metagenome / Metatranscriptome | 493 | Y |
F004898 | Metagenome / Metatranscriptome | 419 | Y |
F007569 | Metagenome / Metatranscriptome | 348 | Y |
F018167 | Metagenome | 236 | Y |
F024290 | Metagenome / Metatranscriptome | 206 | Y |
F027765 | Metagenome / Metatranscriptome | 193 | Y |
F048268 | Metagenome / Metatranscriptome | 148 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222714_1000025812 | F027765 | N/A | MNDEDIRQFMNAFEDFTKHVEVEEFNHSAWTAARQYTDHFYEQKAAELEVTVDYYMQEFL |
Ga0222714_1000025818 | F048268 | N/A | MQLSTQSVSKIADALKPVVIDYIHEDEGYVEYMQTAVIEGIRNTMGDMDEDLLFELGMLIFDRIELK |
Ga0222714_1000025824 | F004898 | GAGG | MDLSEMLDELREIEIYGSEPSDWMGYMGSDDYWVPDEELAY |
Ga0222714_1000025832 | F000345 | AGAAG | MTEQQPNDFDKSLKDWWDSDAFKEMQRANQEAKERAIGKYFMLSEKDRIDMVEAITHIMCKAESEGTSHRGLQSALGIYPAGFWVDHLMDVHNALWSYYNDQKKEQELKDDLDALDDFVK |
Ga0222714_1000025845 | F007569 | GGAGG | MNFTPEQYKLIFTAVRRYQFEKTILDSKEYHECGEILDELFNVVYTQKQEQVT |
Ga0222714_1000025856 | F024290 | GGA | MTLEEILEEYGQEVLDTYYELFPDKDLERFGDRFCGPVGDYADFVLDCYYSTGSDELESIEDFENGVFQEYYYYDHKTSTGFVFYNER |
Ga0222714_1000025873 | F003331 | N/A | MALTEKDKIYHNVWCCAYRRRYEAQVNEDWGRYNREHQTILMCLKIAKWTVFDTEKPHYL |
Ga0222714_1000025875 | F001971 | GGAG | LTYEEFVNKSPEHYMEMVRLIDIKLKYRMEFTNEEKEIKDHIMEFQHQTKLNELRDKFEKCLDIDNTP |
Ga0222714_1000025883 | F018167 | N/A | MIDFTTFELDRFSKLLSTIKDYTKDNLRFPKAGELVEKALAEYSNGLLTRVNLPGIDLIGSDNKTYESKVTQLKNKSEMAVRKVILKNRRKSGNYTDKLADYFIITDVKKGKMCCIPSSRFYKIKDNGSTVTAHADPELSDFFLMGYNDNKETRNYFDESDDFDLRFIRSI |
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