Scaffold Ga0222714

Basic Information
Taxon OID	3300021961 Open in IMG/M
Scaffold ID	Ga0222714_10000258 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021961 Open in IMG/M

Scaffold ID

Ga0222714_10000258 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63185
Total Scaffold Genes	124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	68 (54.84%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

63185

Total Scaffold Genes

124 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

68 (54.84%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Taxonomy

All Organisms → Viruses

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0516	Long. (^o)	-121.88	Alt. (m)	Depth (m)	13
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0516

Long. (^o)

-121.88

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F001971	Metagenome / Metatranscriptome	609	Y
F003331	Metagenome / Metatranscriptome	493	Y
F004898	Metagenome / Metatranscriptome	419	Y
F007569	Metagenome / Metatranscriptome	348	Y
F018167	Metagenome	236	Y
F024290	Metagenome / Metatranscriptome	206	Y
F027765	Metagenome / Metatranscriptome	193	Y
F048268	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000025812	F027765	N/A	MNDEDIRQFMNAFEDFTKHVEVEEFNHSAWTAARQYTDHFYEQKAAELEVTVDYYMQEFL
Ga0222714_1000025818	F048268	N/A	MQLSTQSVSKIADALKPVVIDYIHEDEGYVEYMQTAVIEGIRNTMGDMDEDLLFELGMLIFDRIELK
Ga0222714_1000025824	F004898	GAGG	MDLSEMLDELREIEIYGSEPSDWMGYMGSDDYWVPDEELAY
Ga0222714_1000025832	F000345	AGAAG	MTEQQPNDFDKSLKDWWDSDAFKEMQRANQEAKERAIGKYFMLSEKDRIDMVEAITHIMCKAESEGTSHRGLQSALGIYPAGFWVDHLMDVHNALWSYYNDQKKEQELKDDLDALDDFVK
Ga0222714_1000025845	F007569	GGAGG	MNFTPEQYKLIFTAVRRYQFEKTILDSKEYHECGEILDELFNVVYTQKQEQVT
Ga0222714_1000025856	F024290	GGA	MTLEEILEEYGQEVLDTYYELFPDKDLERFGDRFCGPVGDYADFVLDCYYSTGSDELESIEDFENGVFQEYYYYDHKTSTGFVFYNER
Ga0222714_1000025873	F003331	N/A	MALTEKDKIYHNVWCCAYRRRYEAQVNEDWGRYNREHQTILMCLKIAKWTVFDTEKPHYL
Ga0222714_1000025875	F001971	GGAG	LTYEEFVNKSPEHYMEMVRLIDIKLKYRMEFTNEEKEIKDHIMEFQHQTKLNELRDKFEKCLDIDNTP
Ga0222714_1000025883	F018167	N/A	MIDFTTFELDRFSKLLSTIKDYTKDNLRFPKAGELVEKALAEYSNGLLTRVNLPGIDLIGSDNKTYESKVTQLKNKSEMAVRKVILKNRRKSGNYTDKLADYFIITDVKKGKMCCIPSSRFYKIKDNGSTVTAHADPELSDFFLMGYNDNKETRNYFDESDDFDLRFIRSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222714_10000258

Overview

Ecosystem & Geography

Associated Families

Sequences