NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10000258

Scaffold Ga0222714_10000258


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10000258 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63185
Total Scaffold Genes124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (54.84%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Associated Families9

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F001971Metagenome / Metatranscriptome609Y
F003331Metagenome / Metatranscriptome493Y
F004898Metagenome / Metatranscriptome419Y
F007569Metagenome / Metatranscriptome348Y
F018167Metagenome236Y
F024290Metagenome / Metatranscriptome206Y
F027765Metagenome / Metatranscriptome193Y
F048268Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000025812F027765N/AMNDEDIRQFMNAFEDFTKHVEVEEFNHSAWTAARQYTDHFYEQKAAELEVTVDYYMQEFL
Ga0222714_1000025818F048268N/AMQLSTQSVSKIADALKPVVIDYIHEDEGYVEYMQTAVIEGIRNTMGDMDEDLLFELGMLIFDRIELK
Ga0222714_1000025824F004898GAGGMDLSEMLDELREIEIYGSEPSDWMGYMGSDDYWVPDEELAY
Ga0222714_1000025832F000345AGAAGMTEQQPNDFDKSLKDWWDSDAFKEMQRANQEAKERAIGKYFMLSEKDRIDMVEAITHIMCKAESEGTSHRGLQSALGIYPAGFWVDHLMDVHNALWSYYNDQKKEQELKDDLDALDDFVK
Ga0222714_1000025845F007569GGAGGMNFTPEQYKLIFTAVRRYQFEKTILDSKEYHECGEILDELFNVVYTQKQEQVT
Ga0222714_1000025856F024290GGAMTLEEILEEYGQEVLDTYYELFPDKDLERFGDRFCGPVGDYADFVLDCYYSTGSDELESIEDFENGVFQEYYYYDHKTSTGFVFYNER
Ga0222714_1000025873F003331N/AMALTEKDKIYHNVWCCAYRRRYEAQVNEDWGRYNREHQTILMCLKIAKWTVFDTEKPHYL
Ga0222714_1000025875F001971GGAGLTYEEFVNKSPEHYMEMVRLIDIKLKYRMEFTNEEKEIKDHIMEFQHQTKLNELRDKFEKCLDIDNTP
Ga0222714_1000025883F018167N/AMIDFTTFELDRFSKLLSTIKDYTKDNLRFPKAGELVEKALAEYSNGLLTRVNLPGIDLIGSDNKTYESKVTQLKNKSEMAVRKVILKNRRKSGNYTDKLADYFIITDVKKGKMCCIPSSRFYKIKDNGSTVTAHADPELSDFFLMGYNDNKETRNYFDESDDFDLRFIRSI

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