Scaffold Ga0222714_10000028

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10000028
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 180803
• Total Scaffold Genes: 266
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 149 (56.02%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F002243	Metagenome / Metatranscriptome	578	Y
F067478	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_10000028136	F002243	N/A	MTTDFPTIQSKDGTMIVSFYPVKTPFGDVSKEWCLQVLEWKGIETMSKKYLNRVEKALAIRERLAYGYVFVKDNTNLPQLGNPFYGAC
Ga0222714_10000028175	F000345	AGGAGG	VASGDHLGKSLQEWWESDSYKEMQKGLEESRQRAVGKYHMLSEEDKLDMIEAITYIMCKAEMEGTSHRGLMDALGIYPAGFWVDYLMDVHNALWSHYHDKKKEQELKDDLDALDNFIT
Ga0222714_10000028249	F067478	AGGAG	MSQATYRGCKYNTDAPKEEYLHWYSETHAPAHPHNKYRGVAYRPCNNWNWEEAK