NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10010940

Scaffold Ga0222715_10010940


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10010940 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7236
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F032961Metagenome / Metatranscriptome178N
F064412Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0222715_1001094014F064412AGGAGMTNYDKVIDAISNQIYLLMVSNESWNEGEAKKTSRKILEIVEEFQGLRSKR
Ga0222715_100109406F032961AGGAMEISEKDKIYKYVWQCAYQRRYFAMCRGDWELYNREHETVLMCLNIAKWTIFDTEKKKYLAN
Ga0222715_100109409F000345N/AMTEEKPVVNPEELEKPNDLGKALQKWWDSDACKELQKKNEEAKQRAVGKYFMLSEEDKLDMVQAICHIMCKAESEGTSHRGLQDALGIYPVGFWVDHLMDVHNALWTYYHDQKKEKELQDDLDSLEKFLKDT

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