Scaffold Ga0222715_10010940

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10010940
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7236
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F032961	Metagenome / Metatranscriptome	178	N
F064412	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1001094014	F064412	AGGAG	MTNYDKVIDAISNQIYLLMVSNESWNEGEAKKTSRKILEIVEEFQGLRSKR
Ga0222715_100109406	F032961	AGGA	MEISEKDKIYKYVWQCAYQRRYFAMCRGDWELYNREHETVLMCLNIAKWTIFDTEKKKYLAN
Ga0222715_100109409	F000345	N/A	MTEEKPVVNPEELEKPNDLGKALQKWWDSDACKELQKKNEEAKQRAVGKYFMLSEEDKLDMVQAICHIMCKAESEGTSHRGLQDALGIYPVGFWVDHLMDVHNALWTYYHDQKKEKELQDDLDSLEKFLKDT