Scaffold Ga0222715_10010712

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10010712
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7321
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (59.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F004546	Metagenome / Metatranscriptome	433	Y
F078429	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1001071225	F004546	GAG	MDYTEEFPFDQFPWKLVHKDGKETRKCYFQSEEHRKKHIDRYKLKKSDIKLSYKYDE
Ga0222715_100107124	F078429	N/A	MTATYVYFVIFACAGYLIVTDPSIAKAVTFVTQLITNKFQVFRWWFVHNPRTPWARYAMHRRSMKLAEELIKEYNEK
Ga0222715_100107127	F000919	GAGG	MRFRDIEFRWSKCNNKYELVKWNTPTEDSFFKDPTCYVIAFFDKNKEGYDMRTIGDRFFEDKDAWVVGKYGLEFLNEVFEIERIEEELK