NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10005833

Scaffold Ga0222715_10005833


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10005833 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10453
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033780Metagenome176Y
F045719Metagenome / Metatranscriptome152Y
F060870Metagenome132Y
F078657Metagenome116Y
F103171Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0222715_1000583310F078657GAGMITYQAWINDLQRDLDQLREDKRELLRKVSDLESLVAEYGNKINNLIQRRGDE
Ga0222715_1000583316F033780AGGMSAGSISPSPWALVAIHWIDAFDSSNGWISIREYKAKPQHVVSVGWLWPDLLEDYVSVTCSYCPDEDPEPDTIGMVTHIPVGMVQKIVNLGTPLF
Ga0222715_1000583320F103171AGGAGMSEQYTRMELRQLAKFLRKVYPGASDQDELWFLIEKTEQLISKGKHATASRRRGDN
Ga0222715_1000583321F060870AGGMDMATASIIVATITAVGGIIVAVINKFRKENQTDHQVVMGILHVVRKSQQRVEDKVDRVDERLDKHLEFHLDGGVLDNERTIHKNGIEATREVSS
Ga0222715_100058339F045719AGAAGGMSATWYKLKSGSWGVKIRHEGTIGDQVEVTNKSGETKEVWLVKRAAKFDDAQLWEVSEEEPEQSAPTLDEEPF

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