Basic Information | |
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Taxon OID | 3300021960 Open in IMG/M |
Scaffold ID | Ga0222715_10005833 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10453 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (90.91%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.0566 | Long. (o) | -122.185 | Alt. (m) | Depth (m) | 29 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F033780 | Metagenome | 176 | Y |
F045719 | Metagenome / Metatranscriptome | 152 | Y |
F060870 | Metagenome | 132 | Y |
F078657 | Metagenome | 116 | Y |
F103171 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0222715_1000583310 | F078657 | GAG | MITYQAWINDLQRDLDQLREDKRELLRKVSDLESLVAEYGNKINNLIQRRGDE |
Ga0222715_1000583316 | F033780 | AGG | MSAGSISPSPWALVAIHWIDAFDSSNGWISIREYKAKPQHVVSVGWLWPDLLEDYVSVTCSYCPDEDPEPDTIGMVTHIPVGMVQKIVNLGTPLF |
Ga0222715_1000583320 | F103171 | AGGAG | MSEQYTRMELRQLAKFLRKVYPGASDQDELWFLIEKTEQLISKGKHATASRRRGDN |
Ga0222715_1000583321 | F060870 | AGG | MDMATASIIVATITAVGGIIVAVINKFRKENQTDHQVVMGILHVVRKSQQRVEDKVDRVDERLDKHLEFHLDGGVLDNERTIHKNGIEATREVSS |
Ga0222715_100058339 | F045719 | AGAAGG | MSATWYKLKSGSWGVKIRHEGTIGDQVEVTNKSGETKEVWLVKRAAKFDDAQLWEVSEEEPEQSAPTLDEEPF |
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