Scaffold Ga0222715

Basic Information
Taxon OID	3300021960 Open in IMG/M
Scaffold ID	Ga0222715_10005607 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021960 Open in IMG/M

Scaffold ID

Ga0222715_10005607 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10670
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (40.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10670

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (40.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0566	Long. (^o)	-122.185	Alt. (m)	Depth (m)	29
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0566

Long. (^o)

-122.185

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009033	Metagenome / Metatranscriptome	324	Y
F019396	Metagenome	230	Y
F026261	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000560712	F009033	N/A	MDLMLNPNWKKIGISLSGGADSALLAYLICTQSNATIHFNHQIRMWRTRPWQNYIFHQVVEWFVKRFGDRFHIHENLVPPEMEEPNTTYITDEYGKSKPGNRIILRSYNEYIAHKEGLDALYAAVNKNPDIRFEGAPGERYEGHIEPHFVHDGINIVHPFVNTRKDWIMQQYHDLGIEDLLDITRSCEGEFEGLNYKTYTPGDPVPICGECFWCLEKEWALGEVE
Ga0222715_100056077	F026261	N/A	MKTWVTFTRSYSVPRYFGNTKDTIDWNEVITLCQVSTTGDRNTVTSVVDRSEAGADGSLLNSYRDVIGTWENAGYDLKDIYWYDYYPGEHFNIEVQNKFAELVNAQPLRVFVSQVDPGRNVPYHWDVEDKEEEWLKEGKLKRWVCFIDKPRWGSALILENKCLYDIEQGSIFEWDNYRSHHAGTNMGTYKQYLFHFLGRPND
Ga0222715_100056078	F019396	N/A	MEGQGMNWTPYLKLDSIGRPCMAQQTYEPLISEDGKTFCKNYSFPNEYQYRDIKDRPLYTKEVVDWFFQNELSFIEYFKDKSYAPEITDIDYAKQKIYLKWYGESCNQIIYGGKQWPQEQWRKQIRDIIIDQYDEGVYKLTMYPHCHYIDDNDNMRAIDWYGCVPVDEPFIEEKYMQGIIHETAQFRLDETGKPIEDKLNLEIMFQRSLSTHVLWGDENMGYIYKELFSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222715_10005607

Overview

Ecosystem & Geography

Associated Families

Sequences