Scaffold Ga0222715_10003588

Overview

Basic Information

• Taxon OID: 3300021960
• Scaffold ID: Ga0222715_10003588
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13792
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (61.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0566
  • Long. (^o): -122.185
  • Depth (m): 29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F010017	Metagenome / Metatranscriptome	309	Y
F100423	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222715_1000358820	F000345	GGA	MNEERPDDIRNALQKWWDSDACKELQKKNEEAKQRAIGKYFMLSEEDKLDMVQAICHIMCKAEEEGTSHRGLQDALGIYPVGFWVDQLIDVHNALWSYYHDQKKEKELKSDLDAMEKFLKDT
Ga0222715_100035886	F010017	GGA	MNHRKRKQAQNQKKIRMYTPEGYIADPPDASCPYCGEKQKPCSHVNSLARAWARGACKKKNQKTETDD
Ga0222715_100035888	F100423	AGCAG	MTLPQQEHNSLLATREFLIDLMNSEKIADVPEKVRLSARALLKHYPSRLRLDELYDGQTFGDSVIKNESDITEDERENNNRIYNNNQTWETPGFKWKTQVEFVKAE