NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222716_10365714

Scaffold Ga0222716_10365714


Overview

Basic Information
Taxon OID3300021959 Open in IMG/M
Scaffold IDGa0222716_10365714 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)849
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0283Long. (o)-122.37Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003805Metagenome / Metatranscriptome467Y
F017824Metagenome238N
F051901Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0222716_103657142F003805N/AMRPIEHSTESCFHKAATDQWLVDRFNAGDYRGLLEAALILNTLHQLERTKASWAIQEAADNLADHFGLDRDSA
Ga0222716_103657143F051901AGAAGGMTPPPKINFTKAAADMARADYLDELFFKDGRDQLSHPMHGTYTGLYQKYTLKKLG
Ga0222716_103657144F017824N/AQRLGEGRSRTSAEKAELFELMIWIGGQGAMRDLIRAESLQQAIEFAKNRYPNCRVDVPPKAAKKPKLARSYTSPSLVEKRRKKAAEGK

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