Scaffold Ga0222716

Basic Information
Taxon OID	3300021959 Open in IMG/M
Scaffold ID	Ga0222716_10015070 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021959 Open in IMG/M

Scaffold ID

Ga0222716_10015070 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5807
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5807

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (10.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.0283	Long. (^o)	-122.37	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.0283

Long. (^o)

-122.37

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008687	Metagenome / Metatranscriptome	329	N
F009207	Metagenome / Metatranscriptome	321	N
F039607	Metagenome / Metatranscriptome	163	N
F101072	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_1001507010	F009207	N/A	MERAWELFWKLDQRDKFVHMASPVEWVENKDHWTKTWLEYKNKIPGFMRPFMFMNPFSFYMEYCYRMVSESNETLRMPLVPPESEVLFDGCT
Ga0222716_100150702	F008687	N/A	MDKFLKTKKDNIFDKCEPGKMFLVKGWSTAQICKTLGASAVYVGTDTLRSQNVTENFFGFIGFSKADIVMDDSSMIKNELPGWRWIQQNRIKIRSRIFIPCENNLDTIQIQDKTLEPENAKEVVETLHQRDLFKTTKEIMDDVLTTKGKFKVNDYLGMHMDEPGNRMGIVQENYIHAKGITMDEASVIADHLVDADYWDNMMYSTMYNEQIHEQFVLSAVINPCAIIQNRIPVNKMAAARVWTKDFNMRLKKSLEKYWVRSDPDTMQVLRHKPEFIPEYCKNSSGIHLINQTSMGLKIKNDVLKSIKGVLKEREQDFL
Ga0222716_100150704	F101072	N/A	MNMKMPKLSQQAMIVAFAAVLPVLASAYKLRVLDAAVLLLSGALAVYNVNCLTAGSCNTWATVVSVSFFIMTIMQLMTPREGLEGEEEVVVTDAKEVTEVPAVVEEVPAAPAAEPAPTEAKMPAEAKPEKAIAKAAPIITTDEEFELLKAQLMQ
Ga0222716_100150708	F039607	N/A	MKIYADQCIENSIKALLMDNPSFYKQDMYKTMAKYQCMYTCCHLDNREKKCSTPAVLRGYCEKHAIPTAYEQMTNNTRRSSLPNRVMPSFGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222716_10015070

Overview

Ecosystem & Geography

Associated Families

Sequences