Scaffold Ga0222716_10001159

Overview

Basic Information

• Taxon OID: 3300021959
• Scaffold ID: Ga0222716_10001159
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22185
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (48.39%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0283
  • Long. (^o): -122.37
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011354	Metagenome / Metatranscriptome	292	Y
F020000	Metagenome / Metatranscriptome	226	Y
F052478	Metagenome / Metatranscriptome	142	N
F073486	Metagenome	120	Y
F085642	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222716_1000115920	F011354	GGAG	MGTRICPGGCIHLEVDAETRMTSATFTFLTPTDCVDFGALMTRLAAGIEVMIEVEDDDD
Ga0222716_1000115922	F020000	GGAG	MANIGTVAVDRFTNTVEHTGNTMSAVDDWFEVHAHCSQYSFAANVTSSANFTIALEANFNGNGSWFTIDTGKTINSAGQYVYFYEGRAATKIRMRIAAISSGTVTLTPHIVAGYHG
Ga0222716_1000115926	F073486	N/A	MAQTFQWTGSYVSGSTACAVVRYAGPTNTRGSRWLASIKRDSETTWRASATFDEGPITAALRAATKGGVEWSCVTCHSIDADTYAIGF
Ga0222716_1000115929	F085642	N/A	MPSTFSTTEPALTRTKARKQAAKDARQAERDQIRDQKRQLRDLCYIAEHQTIPAAMAQEFWQQLIQLQHEHGKEGTTEFWWAIVPKWEQIQLGRGGGLCPDSMRPANAPSLSETHKRVAAALERASHNTRTLDASQVLQAWALEDGTV
Ga0222716_1000115931	F052478	N/A	MAGAMLILAGILIGLYGLAVLLGDKEPDGTVREGVAGAKKRRRSKR