Scaffold Ga0222718_10076330

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10076330
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2032
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004814	Metagenome / Metatranscriptome	423	Y
F007062	Metagenome / Metatranscriptome	359	Y
F009857	Metagenome / Metatranscriptome	312	Y
F091628	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100763301	F004814	AGGA	MIRGDSADYDLLDKWTKGFDCQGYKTCEIGVREGLGSKI
Ga0222718_100763303	F007062	AGGAG	MMDETRFKNIQTERDVLTVKHIQKLHEEIDMLRKQKMYLQSKLREKGKQNESKNINK
Ga0222718_100763307	F091628	AGGAG	MATSAEFFIRKLTIELDELARQYNKTKDPSIRDQWYKKLKQVPPQSAFLHKKT
Ga0222718_100763308	F009857	AGGA	MIYNIKQKIINNLYESELFEPSIARTAHKAATLIEKLVESKNPKQELKKWLQVQNSL