Scaffold Ga0222718_10058445

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10058445
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2411
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014793	Metagenome / Metatranscriptome	260	Y
F047657	Metagenome / Metatranscriptome	149	N
F077332	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100584451	F047657	N/A	DVKYGIEITRPWNPAMYKHNEEVATQMKRNLEEALNKAEAEDDRDALCELAKIVNGYGYSEDFTIGEIWEETLFALDYKVENWWLHREYPYAVKKGFVPALEKEMIGYK
Ga0222718_100584453	F077332	N/A	MKRYTLRVHCGDGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG
Ga0222718_100584454	F014793	AGGA	MFEEQVFWKDGFDGEAKGGLHFRSFDLNQFIKKVEEDGTEVVGIKFEDNNLELIIKK