Scaffold Ga0222718_10031017

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10031017
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3576
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F067760	Metagenome / Metatranscriptome	125	N
F087019	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1003101710	F010318	AGGAG	MNVDSDKPKYIECIYEAPITFDLEELGIDWENVKDYYIKYGTLYVEFKDGSSEEHEGNHGETDWKWSAQENILTEDWTLVEGLN
Ga0222718_100310174	F087019	GAGG	MIGELIGLGFIILFMLVSLTAVGFIIADSDYDKKRKDD
Ga0222718_100310175	F003051	N/A	MKTKILKSKVTIEMSNEEYDTMFKYIDKLRSMLNTLHETNDLWLSDVQNLHSLKWELVEMLDAEWNSNTYKYVKRGSK
Ga0222718_100310177	F067760	N/A	MKIRRIDMYIMNQYKNYCDEALRYKEFQKTFQAWKEDNIVSLVKEYKNYRRLDRYGSQV
Ga0222718_100310178	F010532	GGAGG	MNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDEPMNVSEVDIIHRIEEHMSYMVSSYLTKPYEGIGMDEQFITGA