Scaffold Ga0222718_10022467

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10022467
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4351
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F007346	Metagenome / Metatranscriptome	353	Y
F011124	Metagenome / Metatranscriptome	295	Y
F020896	Metagenome / Metatranscriptome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1002246710	F011124	GAGG	MFDPDKTYGITVWDMSVAVVDVEADDYVRNDDGSIKLFNIPNYDYSYICDGIDVDDLHERDEGDDYDG
Ga0222718_100224675	F020896	AGGAG	MVKKKEKTQWEINQEQAAATWKSMTSKQQQAVLEMLQAFVPIRQSVSELCDISYDDLRNMDQAWYTLRRLLVDDNVEVKYWNY
Ga0222718_100224676	F007346	AGGAG	MTDNEIKGIQLSQAVEWSGQDIFEVASAAFEDANYHSFNEVFTAAWTEFQKELQDG
Ga0222718_100224679	F002733	AGGAG	MAKEQTIWLQLTPIQANAIMVMLDSEMETRFRYEGLDLKEWETLDLEAYKILAYHKFKTWYMENCNE