Scaffold Ga0222718_10016319

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10016319
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5272
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000256	Metagenome / Metatranscriptome	1448	Y
F004952	Metagenome	417	Y
F020173	Metagenome	225	N
F054773	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1001631912	F004952	GGAGG	MNLTNTHEFLITHITDSGTGFAVRTDNGESVHISPRLLQQAHANIDDICKGIIVQNAIEENRERTPWVAAYVQERRAARDVLGLATDVPAEAVQAPTEEPEQVDWADVQRKIISILQSDEVTYCETADIADVVGVEPRRLSQHLENMHARGEICKAHVNQRAGQKRATLVLWSINADVYK
Ga0222718_1001631913	F020173	GGA	MICTTCDGTGFIELPRFVNTPDSEPWTTVRCPECQDEDDFDWRNEEEEE
Ga0222718_1001631914	F054773	AGGAGG	MTKQENIISIVSEAVEKAWEGSASAKEASEKYLAMLQQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQTVLNKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATSEDLEQAIMHETSRSKHHEGQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE
Ga0222718_100163195	F000256	N/A	MADGVSGIGSAPFNVQSDIHQQTQSRERIEAHLTEQRVAKEHRANYAHLEALREQNLDLGKAYDRFGTKTTADRPQGANINIEV