NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10013122

Scaffold Ga0222718_10013122


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10013122 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6018
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008548Metagenome / Metatranscriptome331N
F015588Metagenome / Metatranscriptome253N
F064685Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100131221F064685N/ADNAMYDDKTKTIKIIDWGFAAPVSQNNLTKEGLLKRYKEVLANRLGMGWERSQVNWVTKMKRNPLGQYAIEVIPYNARFKGLKPRDNVVDFMRVILNNSNNFPAPAPMTREQFMKSLFSPSPTPSPTPKYNNTSK
Ga0222718_100131227F015588AGAAGMMKLSGKGSMDTLPSDLVHNIFTRACMMEMEEKFPLNYRFNTDHSEVEFSANDLVVRRDRVIADLSNFVYNHIFTSMRLPILHFEKRIGKKVVYSQHVHLWNDEIIQRHTGKIPKSPLESYLWNMMMLIN
Ga0222718_100131228F008548GAGMDILPLDLQCDILKRATLLDLKENPFKSKYKVGFTFGINAVITLEWDNDLVESDPWEFLDMIRHYYDKSIEDYEDLIFRMVDEEKMNYEPHVGLEGQLFSRLYQENEHLLTFKFFIKSGDTVLDHQDLEFFKSMEPHLDKGYIMYQLVMLTQFLRDIYSIEFLEKYNEYVLREEGYDETE
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