Scaffold Ga0222718_10009279

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10009279
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7492
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F008595	Metagenome / Metatranscriptome	331	Y
F013088	Metagenome / Metatranscriptome	274	Y
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000927910	F001942	N/A	MPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCFPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFVFASENSRSMSETYKHYTCDILAFVFFDEDKKRIMFKPNTSSQNYFTFDKKSITDDMELESLKETLDSLSSVPVLNPII
Ga0222718_1000927914	F008595	AGGAG	MSKEENKMQEENPVVITYNDVEYRRSDLNEEQMALAAKLNVAGRKLNRLQEFYDDYVITNEYKNLVIESFDRAIKAEDEEVEVVEEE
Ga0222718_100092793	F067646	AGGA	MLEWILYFIAGIFGLVAIGGLISIVAAIYILNELD
Ga0222718_100092795	F013088	AGGAG	MDEKIKKALWISEDLHKEIKIFAIKNNMNIETASQMVLKLGMCSYKAEKKNGSK