Scaffold Ga0222718_10008311

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10008311
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8004
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017727	Metagenome / Metatranscriptome	239	Y
F024920	Metagenome	204	Y
F033631	Metagenome	177	N
F038854	Metagenome / Metatranscriptome	165	Y
F091001	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000831110	F033631	N/A	MARKLKQTKHKGEKLMKKYQVKVYNKVDNSYRIAMETPDLDMAEDKMERLSNQGHLVKIDLKPNETPDHLKNVPKDKLDTLVEIFKPRL
Ga0222718_1000831112	F024920	AGGAG	MIEELLDKYHEDDFDDLLIQIIKHMQEAKEIREMDREQD
Ga0222718_1000831117	F091001	GGAG	MKNLIIKWLGLEGLMDLRITQLQPGTVDAVIYDLNNKYDLDGLTSKFDDYIGTVDDLEYKADKWDDMADKIEDLEINDIVADIEARLDLDRIQQLDDQLTELLAGYKLDVQLVKEEF
Ga0222718_1000831118	F017727	AGGAGG	METIQERNQALIQRLNDMVRDTPISGSFGLLGQLLVDQGLADTRAGAIDEACNYDLHQAPLDRQILQDIYHTVSYKKLTSAICNCDGSNFPWLLKIAPRLIKICLENKVDLALIERTEEAFDQLDRRAS
Ga0222718_100083118	F038854	AGGAGG	MDNPRRIVSATILVEWSDNPKPVVLNNDMPNGLSNDFDDWLTECENEENVK