Scaffold Ga0222718_10003666

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222718_10003666

Scaffold Ga0222718_10003666

Overview

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10003666 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13091
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)		Depth (m)	12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002188	Metagenome / Metatranscriptome	585	Y
F081367	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100036662	F081367	AGGAG	MSKIKPNIITPFNDRERIKDLVLEVITDTFVTSHTPDSVTLSGGLLTVTLTNKKFVFQDIAVDDLSDYIDLYLQGLKLEGDVYTVTDNGSDIIINFTEAVGLDQSLYDTDDFEVKGKIVS
Ga0222718_100036663	F002188	N/A	MIKDLQKILLQVHAPNEYQLSEVSNEHPLYWIWSVPNAKMRDLDLKIREFRKEHARFDIFINGQYILEKDYIFEQDGKDLLVKFKKSNFPYTLTSTDNIKLEGDVVSTXAR

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