NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10003645

Scaffold Ga0222718_10003645


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10003645 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13125
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (18.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008687Metagenome / Metatranscriptome329N
F015087Metagenome / Metatranscriptome257N
F015991Metagenome / Metatranscriptome250N
F039607Metagenome / Metatranscriptome163N
F099221Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000364510F008687N/AMDKFLKTKKDNIFDKCEPGKLFLVKGWSTAQICKTIGASAVYVGTDTLRSQNVTQNFFGFIGFSKADIVMDDCCMIKNELPGWRWIQQNRIKIHSRIFIPCENNLDTLQIQDKTLEPENIKEVVETLHQRDLFKTTKEIMEDVLTTKGKFMANDYLGMHMDEPGNRMGIVQENYVHTKGITMDEASMIADHLVDADYWDTMMYSTMYNEQIHEQFVLSAVINTCAIIQNRIPINKMSPARVWTKDFNMRLKKSLEKHWVHSDPDTMQVLRHKPELIPEYCKNSSGIHFINQTSMGLKIKNDVLKSIKGVLKEREQDFL
Ga0222718_1000364517F099221N/AMQDLSLSQKVGVAIAIAPTVLMFGPIPIILASGDFLMRQIVKHKLQDNSVKFKPK
Ga0222718_1000364518F015087N/AMYGYSVWLVPLNHRLLTKVYKFRHIPHITISTNHATVPDPDNLGRLYNVVDFKQYGKIGKQYEVDPLHSLGWECEVEDLDIKHTPHLSHLYSFFPYAKVYSVYPTPMRLIAEVCVADTRSPDWEEWRIIKEKIPR
Ga0222718_1000364519F015991N/AMAFLPFLRHGDLYDLLDTTSKVLNELPNMEKQFNTKMADRYLYKRTHTTDEGFEIEMHLPGVGKDNIQIMLSSDDHEVTVGYGENRSASFDLPSYVDVSDDGYKASYVDGVLRLFFKMRTSDKKRREIKLD
Ga0222718_100036454F039607N/AMDLTSEFSALQTNVDRKMKIYADQCIENAIKALLMDNPSLYKQDMYKTMAKFQCMYTCCHLDQREKKCSTPAVLRGYCEKHAIPTAYEQMTSSNTRRTSLPNRVMPSFGS
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