Scaffold Ga0222718_10000516

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000516
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39494
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (50.98%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031858	Metagenome	181	N
F039111	Metagenome / Metatranscriptome	164	N
F045114	Metagenome / Metatranscriptome	153	N
F063658	Metagenome / Metatranscriptome	129	N
F093628	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000051617	F031858	N/A	MARDPLNYNQVLSQILNLAGIDRATLPTLEWNLFRDFTSRRIKFAWQAAKWPEVTVTESRTVTQTGDDEGNYIDLKQSGQTEIGEVFSVWNKSPKSNQNQDDLTWYLSENGIQIAESNATVWIWFRKSPPALTGNLYSGSSSYAVGDQVYDNTQGQFYTANQPVAAGSNSPTDQPSYWDLVSIPVIFFDYLVRGSYSDYLRHNGELDRARVAEADARDVLDHELLKLHTQQGQTTRIQVAGY
Ga0222718_1000051623	F063658	GGA	MNETLQTLLKTFEDLLSLPEQVSKLRQSHAASLQTLQAQVDQLQTPRTAPTGLMRYHYELDPKDPDGSWDRIVKEGQAEQRKDFLEGEAYWTSKQGKSPSGYGWFGSVSMPVITLVATAPEYNFRRTKRLPGRFRLWSPTRWGSTLRFHCDEGPTLRDNWTNSEGIAYGFKTNAPIGIYVEPTTYVDDQFHVRPFEQSIENCLLVAHNGTLPIYLADNQDRFWIRDCNIQQHQGAQVGIKHGPPIETSSLRQAPMANVYLADPKFIDLQMEGPHNAQRPQTAIFAAGNNIHMRGLNLYGWLQGPYLHGGMNRYVQVQVHKSNTHDGRQPLPLHEVCGVTLNKYLPGEVADCVGAGVAKYVPAAYVAPSTLGTHRKGEGLYGG
Ga0222718_1000051634	F093628	AGGA	MKTKRKRKAIRRTGLDTAELRWKAGREPMEATVTGRPMNQRLLETSLGLVRVSDSAPFQKGLRIPVWVEQGSGKLYCKGRPQRLDRY
Ga0222718_1000051635	F039111	N/A	MGVKTKWNPDLEASGIKRYTGSRLKKTDPERYDSVVKAAKKGFGPETLTEVFGVSPQLAAEIVKQAERDPKAQEAFLSDLIKTRDSALEKLSAAIESGELKPDKLPVTLGILIDKVETIMGKPSTTIRHETINLSDQTLREMIESCKPAKVVDAEVIEEKS
Ga0222718_100005168	F045114	N/A	MKLLCVAVLTVMVTGCKQLDSLGNAIYDPVVTTNIVSTPSGNYPVVSTNGWVLNPSIGGGIQLAGDVAPFPWAGLAANALIAALGVGAHIRGRQWKKAAVSGVSAAQTFKRELKQLDATKAQSVKESVIREQRTSGTKNIIENILNRI