Scaffold Ga0222718_10000413

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000413
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44541
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (56.72%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000413	Metagenome / Metatranscriptome	1169	Y
F003612	Metagenome	477	Y
F004488	Metagenome / Metatranscriptome	436	Y
F007610	Metagenome	348	Y
F018008	Metagenome / Metatranscriptome	237	Y
F018079	Metagenome / Metatranscriptome	237	N
F030606	Metagenome / Metatranscriptome	185	Y
F043140	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100004131	F018079	N/A	VSTFMYTVEKRKMIYIISRKPTWFHTHCLTPTPGTPLWYDPTWVIGDCELCRMDIDNQDWWNNCSYNQSQRKFYDLIEKELKVWI
Ga0222718_1000041312	F000413	GAG	MLLDESELVKYLWKHKALEFRYPKHKNRLDLYADEKYLMMGKLKYPNMFGNRKRMGFMELYIVHRINQKLSIAKGST
Ga0222718_100004132	F004488	GGAGG	MFRNIRRWIDGYIKHLVDAYDPPKPTVYKLGKKKYVKVKRLRTDSKAKGPYIK
Ga0222718_1000041322	F030606	AGG	MGIREVIKGDEVAVCVVGLAGPDYKEVLDIAKKVFPFDTFHMQWKGYDKPNVDPLILFDEPQYNYHNLLDTQYKPDCAIWKRYTEQPGGKLFRREGLLAKTKHNSKQTLAHYWLVNTLPDKYKTIIKLRYDTLLSQKVDFMPLLEKAQQGTVVGIAGSQPGYNIDTPLKVHSYKDCRRCTGPYVWDHLIFHPRHKLKNVEKEFKNKNLMGAEWGWYQILNLQWGDNNYINVEGGNVLTKHRP
Ga0222718_1000041335	F043140	GAGG	LSKVNLEIAENLEFDEGDIAITIKPDGAIGKIIMPKMTEEIRSSEGYRKMLDVVELLSPGAKEEFIKHDSKEKGSVH
Ga0222718_1000041340	F007610	AGTAG	MAQSGRKTIKIDAPIMVTADGPPVWMDNGEWAMNFFDWLAEVKLNKKLAGIQYMHNRIKLTFVSPKDCTAFSLRFSSKGE
Ga0222718_100004135	F003612	AGGAG	VPATPNNFQVTSAIGETDNFIGADISFFHITLKDNGASAVDVRTELGYDEAVHNVIRAILDRGTIVHQRIENAATGRIDIAMERAGWTASTLQTAIRDLGATVGVNDVDLRGTVVTETELKLDNS
Ga0222718_100004136	F018008	N/A	MLIVLVWVGVSGCTPTDYINKESPHQTDAEYQKEITAEMEAMDKEQVSKDNPRPADFNSIAEVLGCVFAPNDCVLEKRKQEKEMDR